FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6924, 227 aa
  1>>>pF1KB6924 227 - 227 aa - 227 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6614+/-0.000636; mu= 12.7479+/- 0.038
 mean_var=72.4341+/-14.160, 0's: 0 Z-trim(112.1): 2  B-trim: 0 in 0/50
 Lambda= 0.150696
 statistics sampled from 12898 (12899) to 12898 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.396), width:  16
 Scan time:  2.100

The best scores are:                                      opt bits E(32554)
CCDS12404.2 NDUFA13 gene_id:51079|Hs108|chr19      ( 144)  988 223.1 7.5e-59


>>CCDS12404.2 NDUFA13 gene_id:51079|Hs108|chr19           (144 aa)
 initn: 988 init1: 988 opt: 988  Z-score: 1170.1  bits: 223.1 E(32554): 7.5e-59
Smith-Waterman score: 988; 100.0% identity (100.0% similar) in 144 aa overlap (84-227:1-144)

            60        70        80        90       100       110   
pF1KB6 RTISSASATLIMAVAVSHFRPGPEVWDTASMAASKVKQDMPPPGGYGPIDYKRNLPRRGL
                                     ::::::::::::::::::::::::::::::
CCDS12                               MAASKVKQDMPPPGGYGPIDYKRNLPRRGL
                                             10        20        30

           120       130       140       150       160       170   
pF1KB6 SGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLREN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLREN
               40        50        60        70        80        90

           180       190       200       210       220       
pF1KB6 LEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGELYGLRTTEEALHASHGFMWYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGELYGLRTTEEALHASHGFMWYT
              100       110       120       130       140    




227 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:22:01 2016 done: Fri Nov  4 12:22:01 2016
 Total Scan time:  2.100 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]