FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6918, 225 aa
  1>>>pF1KB6918 225 - 225 aa - 225 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3163+/-0.000935; mu= 10.9273+/- 0.057
 mean_var=113.3298+/-23.103, 0's: 0 Z-trim(108.8): 75  B-trim: 0 in 0/51
 Lambda= 0.120476
 statistics sampled from 10382 (10452) to 10382 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.321), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS13123.1 SNRPB2 gene_id:6629|Hs108|chr20        ( 225) 1470 265.8 1.6e-71
CCDS12565.1 SNRPA gene_id:6626|Hs108|chr19         ( 282)  616 117.4 9.4e-27


>>CCDS13123.1 SNRPB2 gene_id:6629|Hs108|chr20             (225 aa)
 initn: 1470 init1: 1470 opt: 1470  Z-score: 1397.3  bits: 265.8 E(32554): 1.6e-71
Smith-Waterman score: 1470; 99.6% identity (99.6% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KB6 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NKKSGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEV
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEV
              130       140       150       160       170       180

              190       200       210       220     
pF1KB6 RLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK
              190       200       210       220     

>>CCDS12565.1 SNRPA gene_id:6626|Hs108|chr19              (282 aa)
 initn: 636 init1: 599 opt: 616  Z-score: 593.8  bits: 117.4 E(32554): 9.4e-27
Smith-Waterman score: 840; 54.7% identity (71.1% similar) in 256 aa overlap (2-203:5-260)

                  10        20        30        40        50       
pF1KB6    MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFK
           . ::::::::::.:.::::.:::.::::.:::::...::.. ...:::::::::::
CCDS12 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 ELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTA
       :..:.:::::..:::::: :::::::::::::::.::.:::.....:.::.: :. :  :
CCDS12 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPA
               70        80        90       100       110       120

       120       130                                   140         
pF1KB6 TTTNKKSGQGTPNSANTQG----------------------------NSTPNP-----QV
       :    ..: .::  . .::                            .  : :     :.
CCDS12 TKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQI
              130       140       150       160       170       180

                               150       160       170       180   
pF1KB6 P---------------------DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV
       :                     . :::.::::.::::::::.::::::::::::::::::
CCDS12 PPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV
              190       200       210       220       230       240

           190       200       210       220     
pF1KB6 PGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK
       :::::::::::.:. :::::                      
CCDS12 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK
              250       260       270       280  




225 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:19:45 2016 done: Sat Nov  5 08:19:45 2016
 Total Scan time:  2.150 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]