FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6916, 225 aa
  1>>>pF1KB6916 225 - 225 aa - 225 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8575+/-0.00045; mu= 7.1382+/- 0.028
 mean_var=127.5441+/-26.115, 0's: 0 Z-trim(113.1): 34  B-trim: 55 in 2/54
 Lambda= 0.113565
 statistics sampled from 22248 (22273) to 22248 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.261), width:  16
 Scan time:  5.150

The best scores are:                                      opt bits E(85289)
NP_005863 (OMIM: 605783) pre-mRNA-splicing factor  ( 225) 1484 254.3 1.2e-67


>>NP_005863 (OMIM: 605783) pre-mRNA-splicing factor SPF2  (225 aa)
 initn: 1484 init1: 1484 opt: 1484  Z-score: 1335.3  bits: 254.3 E(85289): 1.2e-67
Smith-Waterman score: 1484; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KB6 MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FETDIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLRE
              130       140       150       160       170       180

              190       200       210       220     
pF1KB6 MESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENIRQDF
       :::::::::::::::::::::::::::::::::::::::::::::
NP_005 MESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEANKENIRQDF
              190       200       210       220     




225 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:57:25 2016 done: Fri Nov  4 12:57:26 2016
 Total Scan time:  5.150 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]