FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6912, 218 aa
  1>>>pF1KB6912 218 - 218 aa - 218 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9961+/-0.000299; mu= 15.8965+/- 0.019
 mean_var=64.2624+/-12.902, 0's: 0 Z-trim(117.1): 4  B-trim: 62 in 1/55
 Lambda= 0.159991
 statistics sampled from 28810 (28814) to 28810 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.338), width:  16
 Scan time:  6.600

The best scores are:                                      opt bits E(85289)
NP_076425 (OMIM: 611994) 28S ribosomal protein S34 ( 218) 1498 353.8 1.2e-97
NP_001287829 (OMIM: 611994) 28S ribosomal protein  ( 225) 1474 348.3   6e-96
XP_016879084 (OMIM: 611994) PREDICTED: 28S ribosom ( 248)  849 204.1 1.7e-52


>>NP_076425 (OMIM: 611994) 28S ribosomal protein S34, mi  (218 aa)
 initn: 1498 init1: 1498 opt: 1498  Z-score: 1873.7  bits: 353.8 E(85289): 1.2e-97
Smith-Waterman score: 1498; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218)

               10        20        30        40        50        60
pF1KB6 MARKKVRPRLIAELARRVRALREQLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 MARKKVRPRLIAELARRVRALREQLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ESRLLQLLGRLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 ESRLLQLLGRLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KGKTESEAREIEHVMYHDWRLVPKHEEEAFTAFTPAPEDSLASVPYPPLLRAMIIAERQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 KGKTESEAREIEHVMYHDWRLVPKHEEEAFTAFTPAPEDSLASVPYPPLLRAMIIAERQK
              130       140       150       160       170       180

              190       200       210        
pF1KB6 NGDTSTEEPMLNVQRIRMEPWDYPAKQEDKGRAKGTPV
       ::::::::::::::::::::::::::::::::::::::
NP_076 NGDTSTEEPMLNVQRIRMEPWDYPAKQEDKGRAKGTPV
              190       200       210        

>>NP_001287829 (OMIM: 611994) 28S ribosomal protein S34,  (225 aa)
 initn: 840 init1: 840 opt: 1474  Z-score: 1843.6  bits: 348.3 E(85289): 6e-96
Smith-Waterman score: 1474; 96.9% identity (96.9% similar) in 225 aa overlap (1-218:1-225)

               10        20        30        40        50        60
pF1KB6 MARKKVRPRLIAELARRVRALREQLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MARKKVRPRLIAELARRVRALREQLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ESRLLQLLGRLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESRLLQLLGRLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTF
               70        80        90       100       110       120

                     130       140       150       160       170   
pF1KB6 K-------GKTESEAREIEHVMYHDWRLVPKHEEEAFTAFTPAPEDSLASVPYPPLLRAM
       :       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDASFSSSGKTESEAREIEHVMYHDWRLVPKHEEEAFTAFTPAPEDSLASVPYPPLLRAM
              130       140       150       160       170       180

           180       190       200       210        
pF1KB6 IIAERQKNGDTSTEEPMLNVQRIRMEPWDYPAKQEDKGRAKGTPV
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIAERQKNGDTSTEEPMLNVQRIRMEPWDYPAKQEDKGRAKGTPV
              190       200       210       220     

>>XP_016879084 (OMIM: 611994) PREDICTED: 28S ribosomal p  (248 aa)
 initn: 849 init1: 849 opt: 849  Z-score: 1063.4  bits: 204.1 E(85289): 1.7e-52
Smith-Waterman score: 1428; 87.9% identity (87.9% similar) in 248 aa overlap (1-218:1-248)

               10        20        30        40        50        60
pF1KB6 MARKKVRPRLIAELARRVRALREQLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MARKKVRPRLIAELARRVRALREQLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ESRLLQLLGRLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESRLLQLLGRLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTF
               70        80        90       100       110       120

                                            130       140       150
pF1KB6 KGK------------------------------TESEAREIEHVMYHDWRLVPKHEEEAF
       :::                              :::::::::::::::::::::::::::
XP_016 KGKARESGCPAVRCRPPTAQQVCADASFSSSGKTESEAREIEHVMYHDWRLVPKHEEEAF
              130       140       150       160       170       180

              160       170       180       190       200       210
pF1KB6 TAFTPAPEDSLASVPYPPLLRAMIIAERQKNGDTSTEEPMLNVQRIRMEPWDYPAKQEDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TAFTPAPEDSLASVPYPPLLRAMIIAERQKNGDTSTEEPMLNVQRIRMEPWDYPAKQEDK
              190       200       210       220       230       240

               
pF1KB6 GRAKGTPV
       ::::::::
XP_016 GRAKGTPV
               




218 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:19:23 2016 done: Sat Nov  5 14:19:24 2016
 Total Scan time:  6.600 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]