FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6911, 205 aa
  1>>>pF1KB6911 205 - 205 aa - 205 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9755+/-0.000964; mu= 14.7764+/- 0.058
 mean_var=55.5976+/-11.335, 0's: 0 Z-trim(103.8): 31  B-trim: 220 in 1/50
 Lambda= 0.172007
 statistics sampled from 7555 (7576) to 7555 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.233), width:  16
 Scan time:  1.860

The best scores are:                                      opt bits E(32554)
CCDS11328.1 PSMB3 gene_id:5691|Hs108|chr17         ( 205) 1367 347.3 3.9e-96
CCDS34577.1 PSMB1 gene_id:5689|Hs108|chr6          ( 241)  287 79.3 2.1e-15


>>CCDS11328.1 PSMB3 gene_id:5691|Hs108|chr17              (205 aa)
 initn: 1367 init1: 1367 opt: 1367  Z-score: 1839.4  bits: 347.3 E(32554): 3.9e-96
Smith-Waterman score: 1367; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)

               10        20        30        40        50        60
pF1KB6 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV
              130       140       150       160       170       180

              190       200     
pF1KB6 SGMGVIVHIIEKDKITTRTLKARMD
       :::::::::::::::::::::::::
CCDS11 SGMGVIVHIIEKDKITTRTLKARMD
              190       200     

>>CCDS34577.1 PSMB1 gene_id:5689|Hs108|chr6               (241 aa)
 initn: 224 init1: 224 opt: 287  Z-score: 389.9  bits: 79.3 E(32554): 2.1e-15
Smith-Waterman score: 287; 25.8% identity (64.1% similar) in 209 aa overlap (6-205:35-241)

                                        10        20        30     
pF1KB6                          MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMV
                                     .:::...:. :.. . .:.: :..   .. 
CCDS34 TAMYSAPGRDLGMEPHRAAGPLQLRFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIH
           10        20        30        40        50        60    

          40        50        60        70        80        90     
pF1KB6 TTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLL
       : :  : . . :.  :: .:.  :  :... .. ::..:. .... .   .. .:....:
CCDS34 TRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTIL
           70        80        90       100       110       120    

         100       110       120       130       140       150     
pF1KB6 YEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCES-LW
       : .:: :::.  .:.::: .  :  . :.: .:  .  :.: ..:. . ..  . .. . 
CCDS34 YSRRFFPYYVYNIIGGLDEEG-KGAVYSFDPVGS-YQRDSFKAGGSASAMLQPLLDNQVG
          130       140        150        160       170       180  

           160       170              180       190       200     
pF1KB6 EPNM-DPDHLFETISQAM-------LNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD
         :: . .:.  ....::       ..:..::. .: .. . :. :. :  .:.. : :
CCDS34 FKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD
            190       200       210       220       230       240 




205 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:00:34 2016 done: Fri Nov  4 13:00:35 2016
 Total Scan time:  1.860 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]