FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6903, 203 aa
  1>>>pF1KB6903 203 - 203 aa - 203 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1828+/-0.000784; mu= 14.5781+/- 0.047
 mean_var=66.7989+/-13.075, 0's: 0 Z-trim(107.9): 7  B-trim: 0 in 0/50
 Lambda= 0.156924
 statistics sampled from 9892 (9898) to 9892 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.304), width:  16
 Scan time:  1.920

The best scores are:                                      opt bits E(32554)
CCDS10311.1 MTHFS gene_id:10588|Hs108|chr15        ( 203) 1330 309.4 9.4e-85
CCDS58394.1 MTHFS gene_id:100528021|Hs108|chr15    ( 179) 1118 261.4 2.4e-70


>>CCDS10311.1 MTHFS gene_id:10588|Hs108|chr15             (203 aa)
 initn: 1330 init1: 1330 opt: 1330  Z-score: 1635.1  bits: 309.4 E(32554): 9.4e-85
Smith-Waterman score: 1330; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB6 MAAAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAAAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EIETEEIIKDIFQRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EIETEEIIKDIFQRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEVKPYTLALAFKEQIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEVKPYTLALAFKEQIC
              130       140       150       160       170       180

              190       200   
pF1KB6 LQVPVNENDMKVDEVLYEDSSTA
       :::::::::::::::::::::::
CCDS10 LQVPVNENDMKVDEVLYEDSSTA
              190       200   

>>CCDS58394.1 MTHFS gene_id:100528021|Hs108|chr15         (179 aa)
 initn: 1118 init1: 1118 opt: 1118  Z-score: 1376.5  bits: 261.4 E(32554): 2.4e-70
Smith-Waterman score: 1118; 94.4% identity (96.6% similar) in 178 aa overlap (26-203:2-179)

               10        20        30        40        50        60
pF1KB6 MAAAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD
                                :. ::  . : . .:::::::::::::::::::::
CCDS58                         MARSRLTATSVSQVQVIAHSEYQKSKRISIFLSMQD
                                       10        20        30      

               70        80        90       100       110       120
pF1KB6 EIETEEIIKDIFQRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EIETEEIIKDIFQRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDVR
         40        50        60        70        80        90      

              130       140       150       160       170       180
pF1KB6 EEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEVKPYTLALAFKEQIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEVKPYTLALAFKEQIC
        100       110       120       130       140       150      

              190       200   
pF1KB6 LQVPVNENDMKVDEVLYEDSSTA
       :::::::::::::::::::::::
CCDS58 LQVPVNENDMKVDEVLYEDSSTA
        160       170         




203 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:13:26 2016 done: Sat Nov  5 14:13:26 2016
 Total Scan time:  1.920 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]