FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6901, 203 aa
  1>>>pF1KB6901 203 - 203 aa - 203 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8100+/-0.000624; mu= 8.2298+/- 0.038
 mean_var=112.4429+/-22.633, 0's: 0 Z-trim(115.2): 5  B-trim: 0 in 0/52
 Lambda= 0.120951
 statistics sampled from 15757 (15760) to 15757 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.484), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS5013.1 AKIRIN2 gene_id:55122|Hs108|chr6        ( 203) 1329 241.4 2.9e-64
CCDS433.1 AKIRIN1 gene_id:79647|Hs108|chr1         ( 192)  566 108.2 3.4e-24


>>CCDS5013.1 AKIRIN2 gene_id:55122|Hs108|chr6             (203 aa)
 initn: 1329 init1: 1329 opt: 1329  Z-score: 1267.1  bits: 241.4 E(32554): 2.9e-64
Smith-Waterman score: 1329; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB6 MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 YLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 YLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SGPASPGTSSAASSPLKKEQPLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 SGPASPGTSSAASSPLKKEQPLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQYD
              130       140       150       160       170       180

              190       200   
pF1KB6 AFVKFTHDQIMRRYGEQPASYVS
       :::::::::::::::::::::::
CCDS50 AFVKFTHDQIMRRYGEQPASYVS
              190       200   

>>CCDS433.1 AKIRIN1 gene_id:79647|Hs108|chr1              (192 aa)
 initn: 602 init1: 390 opt: 566  Z-score: 547.9  bits: 108.2 E(32554): 3.4e-24
Smith-Waterman score: 721; 57.4% identity (77.5% similar) in 204 aa overlap (1-203:1-192)

               10         20        30        40        50         
pF1KB6 MACGATLKRTLDFDP-LLSPASPKRRRCAPLSAPTSAAASPLSAAAATAASFSAAAASPQ
       ::::::::: ..:.  ::::.:::::::::: .:: .   :    :     :..   .: 
CCDS43 MACGATLKRPMEFEAALLSPGSPKRRRCAPLPGPTPGLRPP---DAEPPPPFQTQ--TPP
               10        20        30        40           50       

      60        70        80        90       100       110         
pF1KB6 KYLRMEPSPFGDVSSRLTTEQILYNIKQEYKRMQKRRHLETSFQQTDPCCTSDAQPHAFL
       . :. .:.: :.     : :::. ::::::.:.:. ::::. ..:.. : .:..:::.  
CCDS43 QSLQ-QPAPPGSERRLPTPEQIFQNIKQEYSRYQRWRHLEVVLNQSEAC-ASESQPHSSA
           60        70        80        90       100        110   

     120       130       140       150       160       170         
pF1KB6 LSGPASPGTSSAASSPLKKEQPLFTLRQVGMICERLLKEREEKVREEYEEILNTKLAEQY
       :..:.:::     :: .::.:: :::::::.:::::::. :.:.:::::.::::::::::
CCDS43 LTAPSSPG-----SSWMKKDQPTFTLRQVGIICERLLKDYEDKIREEYEQILNTKLAEQY
           120            130       140       150       160        

     180       190       200   
pF1KB6 DAFVKFTHDQIMRRYGEQPASYVS
       ..:::::::::::::: .:.::::
CCDS43 ESFVKFTHDQIMRRYGTRPTSYVS
      170       180       190  




203 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:28:50 2016 done: Fri Nov  4 13:28:51 2016
 Total Scan time:  2.190 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]