FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6894, 202 aa
  1>>>pF1KB6894 202 - 202 aa - 202 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8061+/-0.000319; mu= 15.9255+/- 0.020
 mean_var=58.8625+/-11.914, 0's: 0 Z-trim(115.5): 19  B-trim: 0 in 0/52
 Lambda= 0.167169
 statistics sampled from 25970 (25981) to 25970 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.305), width:  16
 Scan time:  6.120

The best scores are:                                      opt bits E(85289)
NP_002300 (OMIM: 159540) leukemia inhibitory facto ( 202) 1352 333.9   1e-91


>>NP_002300 (OMIM: 159540) leukemia inhibitory factor is  (202 aa)
 initn: 1352 init1: 1352 opt: 1352  Z-score: 1767.5  bits: 333.9 E(85289): 1e-91
Smith-Waterman score: 1352; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KB6 MKVLAAGVVPLLLVLHWKHGAGSPLPITPVNATCAIRHPCHNNLMNQIRSQLAQLNGSAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MKVLAAGVVPLLLVLHWKHGAGSPLPITPVNATCAIRHPCHNNLMNQIRSQLAQLNGSAN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ALFILYYTAQGEPFPNNLDKLCGPNVTDFPPFHANGTEKAKLVELYRIVVYLGTSLGNIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ALFILYYTAQGEPFPNNLDKLCGPNVTDFPPFHANGTEKAKLVELYRIVVYLGTSLGNIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RDQKILNPSALSLHSKLNATADILRGLLSNVLCRLCSKYHVGHVDVTYGPDTSGKDVFQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RDQKILNPSALSLHSKLNATADILRGLLSNVLCRLCSKYHVGHVDVTYGPDTSGKDVFQK
              130       140       150       160       170       180

              190       200  
pF1KB6 KKLGCQLLGKYKQIIAVLAQAF
       ::::::::::::::::::::::
NP_002 KKLGCQLLGKYKQIIAVLAQAF
              190       200  




202 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:12:22 2016 done: Sat Nov  5 14:12:23 2016
 Total Scan time:  6.120 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]