FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6890, 202 aa
  1>>>pF1KB6890 202 - 202 aa - 202 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4017+/-0.000651; mu= 12.7410+/- 0.039
 mean_var=61.5321+/-12.275, 0's: 0 Z-trim(110.3): 5  B-trim: 96 in 1/49
 Lambda= 0.163502
 statistics sampled from 11501 (11503) to 11501 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.353), width:  16
 Scan time:  1.680

The best scores are:                                      opt bits E(32554)
CCDS12306.1 ASF1B gene_id:55723|Hs108|chr19        ( 202) 1393 336.5 6.9e-93
CCDS47469.1 ASF1A gene_id:25842|Hs108|chr6         ( 204)  975 237.9 3.3e-63


>>CCDS12306.1 ASF1B gene_id:55723|Hs108|chr19             (202 aa)
 initn: 1393 init1: 1393 opt: 1393  Z-score: 1781.1  bits: 336.5 E(32554): 6.9e-93
Smith-Waterman score: 1393; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KB6 MAKVSVLNVAVLENPSPFHSPFRFEISFECSEALADDLEWKIIYVGSAESEEFDQILDSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAKVSVLNVAVLENPSPFHSPFRFEISFECSEALADDLEWKIIYVGSAESEEFDQILDSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LVGPVPAGRHMFVFQADAPNPSLIPETDAVGVTVVLITCTYHGQEFIRVGYYVNNEYLNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LVGPVPAGRHMFVFQADAPNPSLIPETDAVGVTVVLITCTYHGQEFIRVGYYVNNEYLNP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ELRENPPMKPDFSQLQRNILASNPRVTRFHINWDNNMDRLEAIETQDPSLGCGLPLNCTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ELRENPPMKPDFSQLQRNILASNPRVTRFHINWDNNMDRLEAIETQDPSLGCGLPLNCTP
              130       140       150       160       170       180

              190       200  
pF1KB6 IKGLGLPGCIPGLLPENSMDCI
       ::::::::::::::::::::::
CCDS12 IKGLGLPGCIPGLLPENSMDCI
              190       200  

>>CCDS47469.1 ASF1A gene_id:25842|Hs108|chr6              (204 aa)
 initn: 1018 init1: 952 opt: 975  Z-score: 1248.2  bits: 237.9 E(32554): 3.3e-63
Smith-Waterman score: 975; 70.6% identity (86.8% similar) in 204 aa overlap (1-202:1-204)

               10        20        30        40        50        60
pF1KB6 MAKVSVLNVAVLENPSPFHSPFRFEISFECSEALADDLEWKIIYVGSAESEEFDQILDSV
       ::::.: ::.::.:::::..::.:::.::: : :..::::::::::::::::.::.::::
CCDS47 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LVGPVPAGRHMFVFQADAPNPSLIPETDAVGVTVVLITCTYHGQEFIRVGYYVNNEYLNP
       :::::::::::::::::::::.:::..::::::::::::::.::::::::::::::: . 
CCDS47 LVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTET
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ELRENPPMKPDFSQLQRNILASNPRVTRFHINWDNNMDRLEAIETQDPSLGCGLPLNCTP
       :::::::.:::::.:::::::::::::::::::..: ..::  :...:.:   :  .  :
CCDS47 ELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDNTEKLEDAESSNPNLQSLLSTDALP
              130       140       150       160       170       180

                190       200  
pF1KB6 I--KGLGLPGCIPGLLPENSMDCI
          :: .      ... :. :::.
CCDS47 SASKGWSTSENSLNVMLESHMDCM
              190       200    




202 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:20:03 2016 done: Sat Nov  5 00:20:03 2016
 Total Scan time:  1.680 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]