Result of FASTA (omim) for
pF1KB6889
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6889, 183 aa
1>>>pF1KB6889 183 - 183 aa - 183 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5900+/-0.000432; mu= 17.2564+/- 0.027
mean_var=74.3414+/-15.099, 0's: 0 Z-trim(113.1): 432 B-trim: 1193 in 2/48
Lambda= 0.148751
statistics sampled from 21766 (22288) to 21766 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.261), width: 16
Scan time: 5.120
The best scores are: opt bits E(85289)
NP_002877 (OMIM: 179541) ras-related protein Rap-2 ( 183) 1196 265.6 3.1e-71
NP_066361 (OMIM: 179540) ras-related protein Rap-2 ( 183) 1089 242.7 2.5e-64
NP_001010942 (OMIM: 179530) ras-related protein Ra ( 184) 741 168.0 7.7e-42
NP_056461 (OMIM: 179530) ras-related protein Rap-1 ( 184) 741 168.0 7.7e-42
NP_001010935 (OMIM: 179520) ras-related protein Ra ( 184) 737 167.1 1.4e-41
NP_001278825 (OMIM: 179520) ras-related protein Ra ( 184) 737 167.1 1.4e-41
NP_002875 (OMIM: 179520) ras-related protein Rap-1 ( 184) 737 167.1 1.4e-41
XP_016857451 (OMIM: 179520) PREDICTED: ras-related ( 184) 737 167.1 1.4e-41
XP_016857452 (OMIM: 179520) PREDICTED: ras-related ( 184) 737 167.1 1.4e-41
XP_016857453 (OMIM: 179520) PREDICTED: ras-related ( 184) 737 167.1 1.4e-41
XP_016857449 (OMIM: 179520) PREDICTED: ras-related ( 195) 692 157.5 1.2e-38
XP_016857450 (OMIM: 179520) PREDICTED: ras-related ( 195) 692 157.5 1.2e-38
NP_008843 (OMIM: 609591,615355) GTP-binding protei ( 219) 573 132.0 6.2e-31
NP_001243750 (OMIM: 609591,615355) GTP-binding pro ( 236) 573 132.0 6.5e-31
NP_004976 (OMIM: 109800,114480,137215,163200,19007 ( 188) 568 130.9 1.2e-30
XP_011518955 (OMIM: 109800,114480,137215,163200,19 ( 188) 568 130.9 1.2e-30
NP_002515 (OMIM: 114500,137550,162900,163200,16479 ( 189) 568 130.9 1.2e-30
NP_203524 (OMIM: 109800,114480,137215,163200,19007 ( 189) 565 130.2 1.8e-30
XP_006719132 (OMIM: 109800,114480,137215,163200,19 ( 189) 565 130.2 1.8e-30
XP_016874782 (OMIM: 109800,114480,137215,163200,19 ( 227) 565 130.3 2.1e-30
NP_002921 (OMIM: 609592) GTP-binding protein Rit2 ( 217) 560 129.2 4.3e-30
NP_005334 (OMIM: 109800,137550,162900,163200,18847 ( 189) 553 127.7 1.1e-29
NP_001123914 (OMIM: 109800,137550,162900,163200,18 ( 189) 553 127.7 1.1e-29
NP_036382 (OMIM: 600098) ras-related protein R-Ras ( 204) 539 124.7 9.3e-29
XP_006715825 (OMIM: 179550) PREDICTED: ras-related ( 206) 533 123.4 2.3e-28
NP_005393 (OMIM: 179550) ras-related protein Ral-A ( 206) 533 123.4 2.3e-28
XP_011513768 (OMIM: 179550) PREDICTED: ras-related ( 206) 533 123.4 2.3e-28
XP_016860111 (OMIM: 179551) PREDICTED: ras-related ( 206) 524 121.5 8.7e-28
NP_002872 (OMIM: 179551) ras-related protein Ral-B ( 206) 524 121.5 8.7e-28
XP_005263784 (OMIM: 179551) PREDICTED: ras-related ( 206) 524 121.5 8.7e-28
XP_005263785 (OMIM: 179551) PREDICTED: ras-related ( 206) 524 121.5 8.7e-28
XP_005263786 (OMIM: 179551) PREDICTED: ras-related ( 206) 524 121.5 8.7e-28
XP_005263781 (OMIM: 179551) PREDICTED: ras-related ( 228) 524 121.5 9.4e-28
XP_016860110 (OMIM: 179551) PREDICTED: ras-related ( 228) 524 121.5 9.4e-28
XP_011509875 (OMIM: 179551) PREDICTED: ras-related ( 229) 524 121.5 9.4e-28
NP_789765 (OMIM: 109800,137550,162900,163200,18847 ( 170) 521 120.7 1.2e-27
NP_060064 (OMIM: 607863) GTP-binding protein Di-Ra ( 199) 515 119.5 3.3e-27
NP_036351 (OMIM: 608435) ras-related protein M-Ras ( 208) 513 119.1 4.5e-27
XP_016861376 (OMIM: 608435) PREDICTED: ras-related ( 208) 513 119.1 4.5e-27
NP_001078518 (OMIM: 608435) ras-related protein M- ( 208) 513 119.1 4.5e-27
XP_005247285 (OMIM: 608435) PREDICTED: ras-related ( 208) 513 119.1 4.5e-27
NP_001239019 (OMIM: 608435) ras-related protein M- ( 208) 513 119.1 4.5e-27
NP_006261 (OMIM: 165090) ras-related protein R-Ras ( 218) 511 118.7 6.3e-27
NP_660156 (OMIM: 607862) GTP-binding protein Di-Ra ( 198) 504 117.2 1.7e-26
XP_011526015 (OMIM: 607862) PREDICTED: GTP-binding ( 232) 504 117.2 1.9e-26
NP_001243749 (OMIM: 609591,615355) GTP-binding pro ( 183) 480 112.0 5.6e-25
NP_001259006 (OMIM: 609592) GTP-binding protein Ri ( 153) 457 107.0 1.5e-23
XP_005247286 (OMIM: 608435) PREDICTED: ras-related ( 170) 451 105.7 4e-23
NP_005605 (OMIM: 601293) GTP-binding protein Rheb ( 184) 441 103.6 1.9e-22
NP_116307 (OMIM: 612664) ras-related and estrogen- ( 199) 440 103.4 2.3e-22
>>NP_002877 (OMIM: 179541) ras-related protein Rap-2b [H (183 aa)
initn: 1196 init1: 1196 opt: 1196 Z-score: 1399.8 bits: 265.6 E(85289): 3.1e-71
Smith-Waterman score: 1196; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)
10 20 30 40 50 60
pF1KB6 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EGEREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGCCSAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EGEREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGCCSAC
130 140 150 160 170 180
pF1KB6 VIL
:::
NP_002 VIL
>>NP_066361 (OMIM: 179540) ras-related protein Rap-2a pr (183 aa)
initn: 1106 init1: 1089 opt: 1089 Z-score: 1275.7 bits: 242.7 E(85289): 2.5e-64
Smith-Waterman score: 1089; 91.2% identity (97.3% similar) in 182 aa overlap (1-182:1-182)
10 20 30 40 50 60
pF1KB6 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
NP_066 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL
:::::::::::::::::::::::::::::::::::::::::::::::.::.:::::::::
NP_066 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EGEREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGCCSAC
:.::::: .::.::::::.:::::::::.:. ::::::::::::::::::. :. :::::
NP_066 ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNYAAQPDKDDPCCSAC
130 140 150 160 170 180
pF1KB6 VIL
:
NP_066 NIQ
>>NP_001010942 (OMIM: 179530) ras-related protein Rap-1b (184 aa)
initn: 696 init1: 634 opt: 741 Z-score: 872.1 bits: 168.0 E(85289): 7.7e-42
Smith-Waterman score: 741; 61.4% identity (82.6% similar) in 184 aa overlap (1-183:1-184)
10 20 30 40 50 60
pF1KB6 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
:::::.:::::::::::::::::: : :.::::::::: :::..:::.. .::::::::
NP_001 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL
::::..:::::.:::::: ::::.. :..:.:.. .:.::.::: . ::::::::: ::
NP_001 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 EGEREVSYGEGKALAEEWS-CPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGCCSA
: :: :. .:. ::..:. : :.:.:::.: .:.:.: ..:::.: . : :.
NP_001 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKKSS
130 140 150 160 170 180
180
pF1KB6 CVIL
: .:
NP_001 CQLL
>>NP_056461 (OMIM: 179530) ras-related protein Rap-1b is (184 aa)
initn: 696 init1: 634 opt: 741 Z-score: 872.1 bits: 168.0 E(85289): 7.7e-42
Smith-Waterman score: 741; 61.4% identity (82.6% similar) in 184 aa overlap (1-183:1-184)
10 20 30 40 50 60
pF1KB6 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
:::::.:::::::::::::::::: : :.::::::::: :::..:::.. .::::::::
NP_056 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL
::::..:::::.:::::: ::::.. :..:.:.. .:.::.::: . ::::::::: ::
NP_056 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 EGEREVSYGEGKALAEEWS-CPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGCCSA
: :: :. .:. ::..:. : :.:.:::.: .:.:.: ..:::.: . : :.
NP_056 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKKSS
130 140 150 160 170 180
180
pF1KB6 CVIL
: .:
NP_056 CQLL
>>NP_001010935 (OMIM: 179520) ras-related protein Rap-1A (184 aa)
initn: 697 init1: 635 opt: 737 Z-score: 867.5 bits: 167.1 E(85289): 1.4e-41
Smith-Waterman score: 737; 60.9% identity (83.2% similar) in 184 aa overlap (1-183:1-184)
10 20 30 40 50 60
pF1KB6 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
:::::.:::::::::::::::::: : :.::::::::: :::..::: . .::::::::
NP_001 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL
::::..:::::.:::::: ::::.. :..:.:.. .:.::.::: : ::::::::: ::
NP_001 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 EGEREVSYGEGKALAEEW-SCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGCCSA
: :: :. .:. ::..: .: :.:.:::.: .:.:.: ..:::.: . . . ..
NP_001 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKS
130 140 150 160 170 180
180
pF1KB6 CVIL
:..:
NP_001 CLLL
>>NP_001278825 (OMIM: 179520) ras-related protein Rap-1A (184 aa)
initn: 697 init1: 635 opt: 737 Z-score: 867.5 bits: 167.1 E(85289): 1.4e-41
Smith-Waterman score: 737; 60.9% identity (83.2% similar) in 184 aa overlap (1-183:1-184)
10 20 30 40 50 60
pF1KB6 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
:::::.:::::::::::::::::: : :.::::::::: :::..::: . .::::::::
NP_001 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL
::::..:::::.:::::: ::::.. :..:.:.. .:.::.::: : ::::::::: ::
NP_001 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 EGEREVSYGEGKALAEEW-SCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGCCSA
: :: :. .:. ::..: .: :.:.:::.: .:.:.: ..:::.: . . . ..
NP_001 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKS
130 140 150 160 170 180
180
pF1KB6 CVIL
:..:
NP_001 CLLL
>>NP_002875 (OMIM: 179520) ras-related protein Rap-1A pr (184 aa)
initn: 697 init1: 635 opt: 737 Z-score: 867.5 bits: 167.1 E(85289): 1.4e-41
Smith-Waterman score: 737; 60.9% identity (83.2% similar) in 184 aa overlap (1-183:1-184)
10 20 30 40 50 60
pF1KB6 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
:::::.:::::::::::::::::: : :.::::::::: :::..::: . .::::::::
NP_002 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL
::::..:::::.:::::: ::::.. :..:.:.. .:.::.::: : ::::::::: ::
NP_002 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 EGEREVSYGEGKALAEEW-SCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGCCSA
: :: :. .:. ::..: .: :.:.:::.: .:.:.: ..:::.: . . . ..
NP_002 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKS
130 140 150 160 170 180
180
pF1KB6 CVIL
:..:
NP_002 CLLL
>>XP_016857451 (OMIM: 179520) PREDICTED: ras-related pro (184 aa)
initn: 697 init1: 635 opt: 737 Z-score: 867.5 bits: 167.1 E(85289): 1.4e-41
Smith-Waterman score: 737; 60.9% identity (83.2% similar) in 184 aa overlap (1-183:1-184)
10 20 30 40 50 60
pF1KB6 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
:::::.:::::::::::::::::: : :.::::::::: :::..::: . .::::::::
XP_016 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL
::::..:::::.:::::: ::::.. :..:.:.. .:.::.::: : ::::::::: ::
XP_016 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 EGEREVSYGEGKALAEEW-SCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGCCSA
: :: :. .:. ::..: .: :.:.:::.: .:.:.: ..:::.: . . . ..
XP_016 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKS
130 140 150 160 170 180
180
pF1KB6 CVIL
:..:
XP_016 CLLL
>>XP_016857452 (OMIM: 179520) PREDICTED: ras-related pro (184 aa)
initn: 697 init1: 635 opt: 737 Z-score: 867.5 bits: 167.1 E(85289): 1.4e-41
Smith-Waterman score: 737; 60.9% identity (83.2% similar) in 184 aa overlap (1-183:1-184)
10 20 30 40 50 60
pF1KB6 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
:::::.:::::::::::::::::: : :.::::::::: :::..::: . .::::::::
XP_016 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL
::::..:::::.:::::: ::::.. :..:.:.. .:.::.::: : ::::::::: ::
XP_016 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 EGEREVSYGEGKALAEEW-SCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGCCSA
: :: :. .:. ::..: .: :.:.:::.: .:.:.: ..:::.: . . . ..
XP_016 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKS
130 140 150 160 170 180
180
pF1KB6 CVIL
:..:
XP_016 CLLL
>>XP_016857453 (OMIM: 179520) PREDICTED: ras-related pro (184 aa)
initn: 697 init1: 635 opt: 737 Z-score: 867.5 bits: 167.1 E(85289): 1.4e-41
Smith-Waterman score: 737; 60.9% identity (83.2% similar) in 184 aa overlap (1-183:1-184)
10 20 30 40 50 60
pF1KB6 MREYKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG
:::::.:::::::::::::::::: : :.::::::::: :::..::: . .::::::::
XP_016 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDL
::::..:::::.:::::: ::::.. :..:.:.. .:.::.::: : ::::::::: ::
XP_016 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 EGEREVSYGEGKALAEEW-SCPFMETSAKNKASVDELFAEIVRQMNYAAQPNGDEGCCSA
: :: :. .:. ::..: .: :.:.:::.: .:.:.: ..:::.: . . . ..
XP_016 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKS
130 140 150 160 170 180
180
pF1KB6 CVIL
:..:
XP_016 CLLL
183 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:19:28 2016 done: Sat Nov 5 00:19:29 2016
Total Scan time: 5.120 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]