FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6888, 201 aa
  1>>>pF1KB6888 201 - 201 aa - 201 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9888+/-0.000348; mu= 14.8132+/- 0.022
 mean_var=56.0078+/-11.209, 0's: 0 Z-trim(113.0): 33  B-trim: 200 in 1/54
 Lambda= 0.171376
 statistics sampled from 22154 (22167) to 22154 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.26), width:  16
 Scan time:  5.810

The best scores are:                                      opt bits E(85289)
NP_000598 (OMIM: 138600) alpha-1-acid glycoprotein ( 201) 1344 340.2 1.4e-93
NP_000599 (OMIM: 138610) alpha-1-acid glycoprotein ( 201) 1225 310.7 9.8e-85


>>NP_000598 (OMIM: 138600) alpha-1-acid glycoprotein 1 p  (201 aa)
 initn: 1344 init1: 1344 opt: 1344  Z-score: 1801.2  bits: 340.2 E(85289): 1.4e-93
Smith-Waterman score: 1344; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB6 MALSWVLTVLSLLPLLEAQIPLCANLVPVPITNATLDRITGKWFYIASAFRNEEYNKSVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MALSWVLTVLSLLPLLEAQIPLCANLVPVPITNATLDRITGKWFYIASAFRNEEYNKSVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EIQATFFYFTPNKTEDTIFLREYQTRQDQCIYNTTYLNVQRENGTISRYVGGQEHFAHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EIQATFFYFTPNKTEDTIFLREYQTRQDQCIYNTTYLNVQRENGTISRYVGGQEHFAHLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ILRDTKTYMLAFDVNDEKNWGLSVYADKPETTKEQLGEFYEALDCLRIPKSDVVYTDWKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ILRDTKTYMLAFDVNDEKNWGLSVYADKPETTKEQLGEFYEALDCLRIPKSDVVYTDWKK
              130       140       150       160       170       180

              190       200 
pF1KB6 DKCEPLEKQHEKERKQEEGES
       :::::::::::::::::::::
NP_000 DKCEPLEKQHEKERKQEEGES
              190       200 

>>NP_000599 (OMIM: 138610) alpha-1-acid glycoprotein 2 p  (201 aa)
 initn: 1225 init1: 1225 opt: 1225  Z-score: 1642.2  bits: 310.7 E(85289): 9.8e-85
Smith-Waterman score: 1225; 90.0% identity (96.5% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB6 MALSWVLTVLSLLPLLEAQIPLCANLVPVPITNATLDRITGKWFYIASAFRNEEYNKSVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MALSWVLTVLSLLPLLEAQIPLCANLVPVPITNATLDRITGKWFYIASAFRNEEYNKSVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EIQATFFYFTPNKTEDTIFLREYQTRQDQCIYNTTYLNVQRENGTISRYVGGQEHFAHLL
       :::::::::::::::::::::::::::.::.::..::::::::::.::: ::.:: ::::
NP_000 EIQATFFYFTPNKTEDTIFLREYQTRQNQCFYNSSYLNVQRENGTVSRYEGGREHVAHLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ILRDTKTYMLAFDVNDEKNWGLSVYADKPETTKEQLGEFYEALDCLRIPKSDVVYTDWKK
       .:::::: :..  ..:::::::: :::::::::::::::::::::: ::.:::.::::::
NP_000 FLRDTKTLMFGSYLDDEKNWGLSFYADKPETTKEQLGEFYEALDCLCIPRSDVMYTDWKK
              130       140       150       160       170       180

              190       200 
pF1KB6 DKCEPLEKQHEKERKQEEGES
       :::::::::::::::::::::
NP_000 DKCEPLEKQHEKERKQEEGES
              190       200 




201 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:13:41 2016 done: Sat Nov  5 00:13:42 2016
 Total Scan time:  5.810 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]