FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6888, 201 aa
  1>>>pF1KB6888 201 - 201 aa - 201 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2247+/-0.000759; mu= 13.4965+/- 0.046
 mean_var=56.1311+/-11.102, 0's: 0 Z-trim(106.6): 27  B-trim: 0 in 0/50
 Lambda= 0.171188
 statistics sampled from 9058 (9064) to 9058 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.278), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS6803.1 ORM1 gene_id:5004|Hs108|chr9            ( 201) 1344 339.7 7.1e-94
CCDS6804.1 ORM2 gene_id:5005|Hs108|chr9            ( 201) 1225 310.3   5e-85


>>CCDS6803.1 ORM1 gene_id:5004|Hs108|chr9                 (201 aa)
 initn: 1344 init1: 1344 opt: 1344  Z-score: 1798.9  bits: 339.7 E(32554): 7.1e-94
Smith-Waterman score: 1344; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB6 MALSWVLTVLSLLPLLEAQIPLCANLVPVPITNATLDRITGKWFYIASAFRNEEYNKSVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MALSWVLTVLSLLPLLEAQIPLCANLVPVPITNATLDRITGKWFYIASAFRNEEYNKSVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EIQATFFYFTPNKTEDTIFLREYQTRQDQCIYNTTYLNVQRENGTISRYVGGQEHFAHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 EIQATFFYFTPNKTEDTIFLREYQTRQDQCIYNTTYLNVQRENGTISRYVGGQEHFAHLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ILRDTKTYMLAFDVNDEKNWGLSVYADKPETTKEQLGEFYEALDCLRIPKSDVVYTDWKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 ILRDTKTYMLAFDVNDEKNWGLSVYADKPETTKEQLGEFYEALDCLRIPKSDVVYTDWKK
              130       140       150       160       170       180

              190       200 
pF1KB6 DKCEPLEKQHEKERKQEEGES
       :::::::::::::::::::::
CCDS68 DKCEPLEKQHEKERKQEEGES
              190       200 

>>CCDS6804.1 ORM2 gene_id:5005|Hs108|chr9                 (201 aa)
 initn: 1225 init1: 1225 opt: 1225  Z-score: 1640.0  bits: 310.3 E(32554): 5e-85
Smith-Waterman score: 1225; 90.0% identity (96.5% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB6 MALSWVLTVLSLLPLLEAQIPLCANLVPVPITNATLDRITGKWFYIASAFRNEEYNKSVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MALSWVLTVLSLLPLLEAQIPLCANLVPVPITNATLDRITGKWFYIASAFRNEEYNKSVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EIQATFFYFTPNKTEDTIFLREYQTRQDQCIYNTTYLNVQRENGTISRYVGGQEHFAHLL
       :::::::::::::::::::::::::::.::.::..::::::::::.::: ::.:: ::::
CCDS68 EIQATFFYFTPNKTEDTIFLREYQTRQNQCFYNSSYLNVQRENGTVSRYEGGREHVAHLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ILRDTKTYMLAFDVNDEKNWGLSVYADKPETTKEQLGEFYEALDCLRIPKSDVVYTDWKK
       .:::::: :..  ..:::::::: :::::::::::::::::::::: ::.:::.::::::
CCDS68 FLRDTKTLMFGSYLDDEKNWGLSFYADKPETTKEQLGEFYEALDCLCIPRSDVMYTDWKK
              130       140       150       160       170       180

              190       200 
pF1KB6 DKCEPLEKQHEKERKQEEGES
       :::::::::::::::::::::
CCDS68 DKCEPLEKQHEKERKQEEGES
              190       200 




201 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:13:40 2016 done: Sat Nov  5 00:13:41 2016
 Total Scan time:  2.000 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]