Result of FASTA (ccds) for
pF1KB6885
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6885, 180 aa
1>>>pF1KB6885 180 - 180 aa - 180 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6465+/-0.00056; mu= 17.2603+/- 0.034
mean_var=63.8130+/-12.414, 0's: 0 Z-trim(113.5): 8 B-trim: 62 in 1/53
Lambda= 0.160553
statistics sampled from 14123 (14130) to 14123 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.434), width: 16
Scan time: 2.160
The best scores are: opt bits E(32554)
CCDS7728.1 IGF2 gene_id:3481|Hs108|chr11 ( 180) 1245 295.8 9.4e-81
CCDS44517.1 IGF2 gene_id:3481|Hs108|chr11 ( 236) 1245 295.9 1.2e-80
CCDS44961.1 IGF1 gene_id:3479|Hs108|chr12 ( 158) 319 81.3 3.2e-16
CCDS44960.1 IGF1 gene_id:3479|Hs108|chr12 ( 137) 317 80.8 3.9e-16
CCDS9091.1 IGF1 gene_id:3479|Hs108|chr12 ( 153) 317 80.8 4.3e-16
>>CCDS7728.1 IGF2 gene_id:3481|Hs108|chr11 (180 aa)
initn: 1245 init1: 1245 opt: 1245 Z-score: 1563.2 bits: 295.8 E(32554): 9.4e-81
Smith-Waterman score: 1245; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KB6 MGIPMGKSMLVLLTFLAFASCCIAAYRPSETLCGGELVDTLQFVCGDRGFYFSRPASRVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MGIPMGKSMLVLLTFLAFASCCIAAYRPSETLCGGELVDTLQFVCGDRGFYFSRPASRVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFQYDTWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 RRSRGIVEECCFRSCDLALLETYCATPAKSERDVSTPPTVLPDNFPRYPVGKFFQYDTWK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QSTQRLRRGLPALLRARRGHVLAKELEAFREAKRHRPLIALPTQDPAHGGAPPEMASNRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QSTQRLRRGLPALLRARRGHVLAKELEAFREAKRHRPLIALPTQDPAHGGAPPEMASNRK
130 140 150 160 170 180
>>CCDS44517.1 IGF2 gene_id:3481|Hs108|chr11 (236 aa)
initn: 1245 init1: 1245 opt: 1245 Z-score: 1561.6 bits: 295.9 E(32554): 1.2e-80
Smith-Waterman score: 1245; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:57-236)
10 20 30
pF1KB6 MGIPMGKSMLVLLTFLAFASCCIAAYRPSE
::::::::::::::::::::::::::::::
CCDS44 DGVTIIQIFWVGRKGELLRRTPVSSAMQTPMGIPMGKSMLVLLTFLAFASCCIAAYRPSE
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB6 TLCGGELVDTLQFVCGDRGFYFSRPASRVSRRSRGIVEECCFRSCDLALLETYCATPAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TLCGGELVDTLQFVCGDRGFYFSRPASRVSRRSRGIVEECCFRSCDLALLETYCATPAKS
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB6 ERDVSTPPTVLPDNFPRYPVGKFFQYDTWKQSTQRLRRGLPALLRARRGHVLAKELEAFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ERDVSTPPTVLPDNFPRYPVGKFFQYDTWKQSTQRLRRGLPALLRARRGHVLAKELEAFR
150 160 170 180 190 200
160 170 180
pF1KB6 EAKRHRPLIALPTQDPAHGGAPPEMASNRK
::::::::::::::::::::::::::::::
CCDS44 EAKRHRPLIALPTQDPAHGGAPPEMASNRK
210 220 230
>>CCDS44961.1 IGF1 gene_id:3479|Hs108|chr12 (158 aa)
initn: 310 init1: 172 opt: 319 Z-score: 404.8 bits: 81.3 E(32554): 3.2e-16
Smith-Waterman score: 319; 47.0% identity (66.7% similar) in 132 aa overlap (5-128:27-149)
10 20 30
pF1KB6 MGIPMGKSMLVLLTF--LAFASCCIAAYRPSETLCGGE
:..: : :.. :.:.: :. : :::::.:
CCDS44 MGKISSLPTQLFKCCFCDFLKVKMHTMSSSHLFYLALCLLTFTSSATAG--P-ETLCGAE
10 20 30 40 50
40 50 60 70 80 90
pF1KB6 LVDTLQFVCGDRGFYFSRPASR--VSRRS--RGIVEECCFRSCDLALLETYCAT--PAKS
:::.::::::::::::..:.. :::. :::.::::::::: :: ::: ::::
CCDS44 LVDALQFVCGDRGFYFNKPTGYGSSSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKS
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB6 ERDVSTPPTVLPDNFPRYPVGKFFQYDTWKQSTQRLRRGLPALLRARRGHVLAKELEAFR
:.: . . .: . .: . ...:. ::
CCDS44 ARSVRA------QRHTDMPKTQKYQPPSTNKNTKSQRRKGSTFEERK
120 130 140 150
160 170 180
pF1KB6 EAKRHRPLIALPTQDPAHGGAPPEMASNRK
>>CCDS44960.1 IGF1 gene_id:3479|Hs108|chr12 (137 aa)
initn: 319 init1: 168 opt: 317 Z-score: 403.1 bits: 80.8 E(32554): 3.9e-16
Smith-Waterman score: 317; 58.2% identity (74.5% similar) in 98 aa overlap (5-94:11-105)
10 20 30 40 50
pF1KB6 MGIPMGKSMLVLLTF--LAFASCCIAAYRPSETLCGGELVDTLQFVCGDRGFYF
:..: : :.. :.:.: :. : :::::.::::.::::::::::::
CCDS44 MITPTVKMHTMSSSHLFYLALCLLTFTSSATAG--P-ETLCGAELVDALQFVCGDRGFYF
10 20 30 40 50
60 70 80 90 100
pF1KB6 SRPASR--VSRRS--RGIVEECCFRSCDLALLETYCAT--PAKSERDVSTPPTVLPDNFP
..:.. :::. :::.::::::::: :: ::: :::: :.:
CCDS44 NKPTGYGSSSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARSVRAQRHTDMPKTQ
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB6 RYPVGKFFQYDTWKQSTQRLRRGLPALLRARRGHVLAKELEAFREAKRHRPLIALPTQDP
CCDS44 KEVHLKNASRGSAGNKNYRM
120 130
>>CCDS9091.1 IGF1 gene_id:3479|Hs108|chr12 (153 aa)
initn: 306 init1: 168 opt: 317 Z-score: 402.5 bits: 80.8 E(32554): 4.3e-16
Smith-Waterman score: 317; 58.2% identity (74.5% similar) in 98 aa overlap (5-94:27-121)
10 20 30
pF1KB6 MGIPMGKSMLVLLTF--LAFASCCIAAYRPSETLCGGE
:..: : :.. :.:.: :. : :::::.:
CCDS90 MGKISSLPTQLFKCCFCDFLKVKMHTMSSSHLFYLALCLLTFTSSATAG--P-ETLCGAE
10 20 30 40 50
40 50 60 70 80 90
pF1KB6 LVDTLQFVCGDRGFYFSRPASR--VSRRS--RGIVEECCFRSCDLALLETYCAT--PAKS
:::.::::::::::::..:.. :::. :::.::::::::: :: ::: ::::
CCDS90 LVDALQFVCGDRGFYFNKPTGYGSSSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKS
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB6 ERDVSTPPTVLPDNFPRYPVGKFFQYDTWKQSTQRLRRGLPALLRARRGHVLAKELEAFR
:.:
CCDS90 ARSVRAQRHTDMPKTQKEVHLKNASRGSAGNKNYRM
120 130 140 150
180 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:01:25 2016 done: Fri Nov 4 15:01:25 2016
Total Scan time: 2.160 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]