FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6879, 180 aa
  1>>>pF1KB6879 180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3303+/-0.000658; mu= 11.1849+/- 0.040
 mean_var=155.3886+/-32.476, 0's: 0 Z-trim(117.0): 47  B-trim: 1103 in 1/53
 Lambda= 0.102888
 statistics sampled from 17618 (17675) to 17618 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.854), E-opt: 0.2 (0.543), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS4745.1 RNF5 gene_id:6048|Hs108|chr6            ( 180) 1320 206.1 9.6e-54
CCDS13890.1 RNF185 gene_id:91445|Hs108|chr22       ( 192)  788 127.2 5.9e-30


>>CCDS4745.1 RNF5 gene_id:6048|Hs108|chr6                 (180 aa)
 initn: 1320 init1: 1320 opt: 1320  Z-score: 1078.3  bits: 206.1 E(32554): 9.6e-54
Smith-Waterman score: 1320; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB6 MAAAEEEDGGPEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAAAEEEDGGPEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RQECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RQECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 HFSFGVGAFPFGFFTTVFNAHEPFRRGTGVDLGQGHPASSWQDSLFLFLAIFFFFWLLSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 HFSFGVGAFPFGFFTTVFNAHEPFRRGTGVDLGQGHPASSWQDSLFLFLAIFFFFWLLSI
              130       140       150       160       170       180

>>CCDS13890.1 RNF185 gene_id:91445|Hs108|chr22            (192 aa)
 initn: 729 init1: 616 opt: 788  Z-score: 651.2  bits: 127.2 E(32554): 5.9e-30
Smith-Waterman score: 788; 60.9% identity (77.7% similar) in 184 aa overlap (2-178:8-190)

                        10           20        30        40        
pF1KB6       MAAAEEED---GGPEGPNR---ERGGAGATFECNICLETAREAVVSVCGHLYCW
              :.:  :.   ::: : .    : ::  .::::::::.::..::.:.::::.::
CCDS13 MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW
               10        20        30        40        50        60

       50        60        70        80        90       100        
pF1KB6 PCLHQWLETRPERQECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESR
       :::::::::::.:: ::::::::::.::.:::::::   :::: ::::::::::: ::.:
CCDS13 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENR
               70        80        90       100       110       120

      110        120       130       140       150       160       
pF1KB6 GGFQPFG-DTGGFHFSFGVGAFPFGFFTTVFNAHEPFRRGTGVDLGQGHPASSWQDSLFL
       :::: ::   :::..:::.::::::.:.:.:: ..  :   .:     .   .. . :::
CCDS13 GGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDG-RPPPAVPGTPQYVDEQFLSRLFL
              130       140       150        160       170         

       170       180
pF1KB6 FLAIFFFFWLLSI
       :.:. ..::::  
CCDS13 FVALVIMFWLLIA
     180       190  




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:24:00 2016 done: Sat Nov  5 00:24:00 2016
 Total Scan time:  2.280 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]