FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6877, 180 aa
  1>>>pF1KB6877 180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6545+/-0.000653; mu= 11.8827+/- 0.039
 mean_var=81.5199+/-16.104, 0's: 0 Z-trim(112.6): 4  B-trim: 0 in 0/51
 Lambda= 0.142050
 statistics sampled from 13350 (13351) to 13350 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.41), width:  16
 Scan time:  1.740

The best scores are:                                      opt bits E(32554)
CCDS2003.1 TEX37 gene_id:200523|Hs108|chr2         ( 180) 1307 276.5 6.1e-75


>>CCDS2003.1 TEX37 gene_id:200523|Hs108|chr2              (180 aa)
 initn: 1307 init1: 1307 opt: 1307  Z-score: 1458.9  bits: 276.5 E(32554): 6.1e-75
Smith-Waterman score: 1307; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB6 MAGVKYPGQDPVDLDIYQSSHMVDYQPYRKHKYSRVTPQEQAKLDAQLRDKEFYRPIPNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MAGVKYPGQDPVDLDIYQSSHMVDYQPYRKHKYSRVTPQEQAKLDAQLRDKEFYRPIPNP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 NPKLTDGYPAFKRPHMTAKDLGLPGFFPSQEHEATREDERKFTSTCHFTYPASHDLHLAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 NPKLTDGYPAFKRPHMTAKDLGLPGFFPSQEHEATREDERKFTSTCHFTYPASHDLHLAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GDPNQVLQSADFPCLVDPKHQPAAEMAKGYLLLPGCPCLHCHIVKVPILNRWGPLMPFYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 GDPNQVLQSADFPCLVDPKHQPAAEMAKGYLLLPGCPCLHCHIVKVPILNRWGPLMPFYQ
              130       140       150       160       170       180




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:18:22 2016 done: Sat Nov  5 00:18:23 2016
 Total Scan time:  1.740 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]