Result of FASTA (ccds) for
pF1KB6875
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6875, 159 aa
1>>>pF1KB6875 159 - 159 aa - 159 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0621+/-0.000691; mu= 12.4962+/- 0.042
mean_var=52.2744+/-10.472, 0's: 0 Z-trim(108.1): 19 B-trim: 0 in 0/48
Lambda= 0.177390
statistics sampled from 9959 (9977) to 9959 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.306), width: 16
Scan time: 1.740
The best scores are: opt bits E(32554)
CCDS2113.1 IL1RN gene_id:3557|Hs108|chr2 ( 159) 1079 283.5 3.6e-77
CCDS46396.1 IL1RN gene_id:3557|Hs108|chr2 ( 177) 1062 279.2 8.2e-76
CCDS2114.1 IL1RN gene_id:3557|Hs108|chr2 ( 180) 1062 279.2 8.3e-76
CCDS2115.1 IL1RN gene_id:3557|Hs108|chr2 ( 143) 974 256.7 4.1e-69
CCDS2111.1 IL36RN gene_id:26525|Hs108|chr2 ( 155) 414 113.3 6.1e-26
CCDS2112.1 IL1F10 gene_id:84639|Hs108|chr2 ( 152) 322 89.8 7.3e-19
CCDS42734.1 IL36A gene_id:27179|Hs108|chr2 ( 158) 236 67.8 3.2e-12
CCDS2110.1 IL36B gene_id:27177|Hs108|chr2 ( 157) 218 63.2 7.7e-11
>>CCDS2113.1 IL1RN gene_id:3557|Hs108|chr2 (159 aa)
initn: 1079 init1: 1079 opt: 1079 Z-score: 1498.8 bits: 283.5 E(32554): 3.6e-77
Smith-Waterman score: 1079; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)
10 20 30 40 50 60
pF1KB6 MALETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MALETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 HALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFES
70 80 90 100 110 120
130 140 150
pF1KB6 AACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE
:::::::::::::::::::::::::::::::::::::::
CCDS21 AACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE
130 140 150
>>CCDS46396.1 IL1RN gene_id:3557|Hs108|chr2 (177 aa)
initn: 1062 init1: 1062 opt: 1062 Z-score: 1474.6 bits: 279.2 E(32554): 8.2e-76
Smith-Waterman score: 1062; 100.0% identity (100.0% similar) in 156 aa overlap (4-159:22-177)
10 20 30 40
pF1KB6 MALETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYL
:::::::::::::::::::::::::::::::::::::::
CCDS46 MEICRGLRSHLITLLLFLFHSETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 QGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQD
70 80 90 100 110 120
110 120 130 140 150
pF1KB6 KRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE
130 140 150 160 170
>>CCDS2114.1 IL1RN gene_id:3557|Hs108|chr2 (180 aa)
initn: 1062 init1: 1062 opt: 1062 Z-score: 1474.4 bits: 279.2 E(32554): 8.3e-76
Smith-Waterman score: 1062; 100.0% identity (100.0% similar) in 156 aa overlap (4-159:25-180)
10 20 30
pF1KB6 MALETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVA
::::::::::::::::::::::::::::::::::::
CCDS21 MALADLYEEGGGGGGEGEDNADSKETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVA
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 GYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 GYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENR
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 KQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 KQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE
130 140 150 160 170 180
>>CCDS2115.1 IL1RN gene_id:3557|Hs108|chr2 (143 aa)
initn: 974 init1: 974 opt: 974 Z-score: 1354.3 bits: 256.7 E(32554): 4.1e-69
Smith-Waterman score: 974; 100.0% identity (100.0% similar) in 143 aa overlap (17-159:1-143)
10 20 30 40 50 60
pF1KB6 MALETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEP
::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEP
10 20 30 40
70 80 90 100 110 120
pF1KB6 HALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 HALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFES
50 60 70 80 90 100
130 140 150
pF1KB6 AACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE
:::::::::::::::::::::::::::::::::::::::
CCDS21 AACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE
110 120 130 140
>>CCDS2111.1 IL36RN gene_id:26525|Hs108|chr2 (155 aa)
initn: 410 init1: 242 opt: 414 Z-score: 579.2 bits: 113.3 E(32554): 6.1e-26
Smith-Waterman score: 414; 49.3% identity (70.9% similar) in 148 aa overlap (20-157:9-153)
10 20 30 40 50
pF1KB6 MALETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVP---
::. : :..::.::::.:: :.. .: :.:.:::
CCDS21 MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRW
10 20 30 40
60 70 80 90 100 110
pF1KB6 ----IEPHALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSG
. : ..::..::..:::: :.: : :: ::: .: . :..: :.: : : :
CCDS21 LDASLSP--VILGVQGGSQCLSC-GVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMG
50 60 70 80 90 100
120 130 140 150
pF1KB6 PTTSFESAACPGWFLCTAMEADQPVSLTNMPDEG---VMVTKFYFQEDE
:.:::::: :::::::. :::::: ::..:..: . .: ::::.
CCDS21 LTSSFESAAYPGWFLCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD
110 120 130 140 150
>>CCDS2112.1 IL1F10 gene_id:84639|Hs108|chr2 (152 aa)
initn: 322 init1: 260 opt: 322 Z-score: 452.1 bits: 89.8 E(32554): 7.3e-19
Smith-Waterman score: 322; 42.3% identity (68.6% similar) in 137 aa overlap (26-157:16-150)
10 20 30 40 50 60
pF1KB6 MALETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEP
.::..: :..::..: . : ::: ..: .
CCDS21 MCSLPMARYYIIKYADQKALYTRDGQLLVGDPVADNCC-AEKICILPNRG
10 20 30 40
70 80 90 100 110
pF1KB6 HA-----LFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPT
: .::::.::. ::.::.. . :::: ::: .: .. .. ::.:..:.:: .
CCDS21 LARTKVPIFLGIQGGSRCLACVETEEGPSLQLEDVNIEELYKGGEEATRFTFFQSSSGSA
50 60 70 80 90 100
120 130 140 150
pF1KB6 TSFESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE
.:.:: :::::: : .:::.::. .: :::::..
CCDS21 FRLEAAAWPGWFLCGPAEPQQPVQLTK-ESEPSARTKFYFEQSW
110 120 130 140 150
>>CCDS42734.1 IL36A gene_id:27179|Hs108|chr2 (158 aa)
initn: 222 init1: 222 opt: 236 Z-score: 332.9 bits: 67.8 E(32554): 3.2e-12
Smith-Waterman score: 236; 32.8% identity (62.6% similar) in 131 aa overlap (18-141:11-141)
10 20 30 40 50
pF1KB6 MALETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVA----GYLQGPNVNLEEKIDVV
: : :.:.... :... :.: .. .. : :
CCDS42 MEKALKIDTPQQGSIQDINHRVWVLQDQTLIAVPRKDRMSPVTIALISCRHVE
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 PIEP---HALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSG
.: . ..::..: ..:: :.: ::. :::. .: :: .. . : : : .:.::
CCDS42 TLEKDRGNPIYLGLNGLNLCLMCAKVGDQPTLQLKEKDIMDLYNQPEPVKSFLFYHSQSG
60 70 80 90 100 110
120 130 140 150
pF1KB6 PTTSFESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE
...:::.: ::::. .. :. :. ::
CCDS42 RNSTFESVAFPGWFIAVSSEGGCPLILTQELGKANTTDFGLTMLF
120 130 140 150
>>CCDS2110.1 IL36B gene_id:27177|Hs108|chr2 (157 aa)
initn: 209 init1: 209 opt: 218 Z-score: 308.1 bits: 63.2 E(32554): 7.7e-11
Smith-Waterman score: 218; 31.3% identity (61.3% similar) in 150 aa overlap (18-159:10-157)
10 20 30 40 50
pF1KB6 MALETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQ---GP-NVNLEEKIDVV
... : : : .. : .:.:.:. :. : ...: :.
CCDS21 MNPQREAAPKSYAIRDSRQMVWVLSGNSLIAAPLSRSIKPVTLHLIACRDTE
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 PIEP---HALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSG
. . ..:::.: .:: :.. . :::. :: :: ..: .: : :... :
CCDS21 FSDKEKGNMVYLGIKGKDLCLFCAEIQGKPTLQLKEKNIMDLYVEKKAQKPFLFFHNKEG
60 70 80 90 100 110
120 130 140 150
pF1KB6 PTTSFESAACPGWFLCTAMEADQPVSLTNMPDEGVMV-TKFYFQEDE
:. :.:.. ::::. :. . ::. ::. ..:. :.::.. :
CCDS21 STSVFQSVSYPGWFIATSTTSGQPIFLTK--ERGITNNTNFYLDSVE
120 130 140 150
159 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:35:28 2016 done: Sat Nov 5 07:35:28 2016
Total Scan time: 1.740 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]