Result of FASTA (omim) for
pF1KB6864
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6864, 195 aa
1>>>pF1KB6864 195 - 195 aa - 195 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9552+/-0.00033; mu= 14.5792+/- 0.021
mean_var=55.9627+/-11.030, 0's: 0 Z-trim(113.4): 19 B-trim: 0 in 0/55
Lambda= 0.171445
statistics sampled from 22734 (22750) to 22734 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.267), width: 16
Scan time: 3.780
The best scores are: opt bits E(85289)
NP_057130 (OMIM: 606493) exosome complex component ( 195) 1284 325.5 3.4e-89
XP_011538149 (OMIM: 606493) PREDICTED: exosome com ( 160) 943 241.1 7.1e-64
NP_001305291 (OMIM: 606493) exosome complex compon ( 170) 782 201.3 7.3e-52
NP_001305292 (OMIM: 606493) exosome complex compon ( 152) 764 196.8 1.4e-50
NP_001305293 (OMIM: 606493) exosome complex compon ( 129) 536 140.4 1.2e-33
XP_016871793 (OMIM: 606493) PREDICTED: exosome com ( 126) 527 138.1 5.5e-33
NP_001305295 (OMIM: 606493) exosome complex compon ( 109) 525 137.6 6.8e-33
NP_001305294 (OMIM: 606493) exosome complex compon ( 109) 525 137.6 6.8e-33
>>NP_057130 (OMIM: 606493) exosome complex component CSL (195 aa)
initn: 1284 init1: 1284 opt: 1284 Z-score: 1722.3 bits: 325.5 E(85289): 3.4e-89
Smith-Waterman score: 1284; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)
10 20 30 40 50 60
pF1KB6 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRETE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTK
130 140 150 160 170 180
190
pF1KB6 EFRKVARVQPEFLQT
:::::::::::::::
NP_057 EFRKVARVQPEFLQT
190
>>XP_011538149 (OMIM: 606493) PREDICTED: exosome complex (160 aa)
initn: 943 init1: 943 opt: 943 Z-score: 1267.8 bits: 241.1 E(85289): 7.1e-64
Smith-Waterman score: 943; 100.0% identity (100.0% similar) in 147 aa overlap (49-195:14-160)
20 30 40 50 60 70
pF1KB6 EGSPGSGTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRETESQLLPDVGAIVTCKVSSI
::::::::::::::::::::::::::::::
XP_011 MRTQYPIPAQLSPALPVVSVVRETESQLLPDVGAIVTCKVSSI
10 20 30 40
80 90 100 110 120 130
pF1KB6 NSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDA
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB6 QSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFRKVARVQPEFLQT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFRKVARVQPEFLQT
110 120 130 140 150 160
>>NP_001305291 (OMIM: 606493) exosome complex component (170 aa)
initn: 782 init1: 782 opt: 782 Z-score: 1052.1 bits: 201.3 E(85289): 7.3e-52
Smith-Waterman score: 1068; 87.2% identity (87.2% similar) in 195 aa overlap (1-195:1-170)
10 20 30 40 50 60
pF1KB6 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRETE
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGA-----------
10 20 30 40
70 80 90 100 110 120
pF1KB6 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYK
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --------------VSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYK
50 60 70 80 90
130 140 150 160 170 180
pF1KB6 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTK
100 110 120 130 140 150
190
pF1KB6 EFRKVARVQPEFLQT
:::::::::::::::
NP_001 EFRKVARVQPEFLQT
160 170
>>NP_001305292 (OMIM: 606493) exosome complex component (152 aa)
initn: 1002 init1: 764 opt: 764 Z-score: 1028.8 bits: 196.8 E(85289): 1.4e-50
Smith-Waterman score: 918; 77.4% identity (77.4% similar) in 195 aa overlap (1-195:1-152)
10 20 30 40 50 60
pF1KB6 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRETE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKV----
70 80 90 100 110
130 140 150 160 170 180
pF1KB6 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTK
::::::::::::::::::::
NP_001 ---------------------------------------VGIQMVPISWCEMQCPKTHTK
120 130
190
pF1KB6 EFRKVARVQPEFLQT
:::::::::::::::
NP_001 EFRKVARVQPEFLQT
140 150
>>NP_001305293 (OMIM: 606493) exosome complex component (129 aa)
initn: 536 init1: 536 opt: 536 Z-score: 725.1 bits: 140.4 E(85289): 1.2e-33
Smith-Waterman score: 729; 66.2% identity (66.2% similar) in 195 aa overlap (1-195:1-129)
10 20 30 40 50 60
pF1KB6 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGALPVVSVVRETE
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGA-----------
10 20 30 40
70 80 90 100 110 120
pF1KB6 SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYK
:::::
NP_001 -------------------------------------------------------VEIYK
50
130 140 150 160 170 180
pF1KB6 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTK
60 70 80 90 100 110
190
pF1KB6 EFRKVARVQPEFLQT
:::::::::::::::
NP_001 EFRKVARVQPEFLQT
120
>>XP_016871793 (OMIM: 606493) PREDICTED: exosome complex (126 aa)
initn: 537 init1: 525 opt: 527 Z-score: 713.2 bits: 138.1 E(85289): 5.5e-33
Smith-Waterman score: 527; 74.8% identity (85.4% similar) in 123 aa overlap (82-195:5-126)
60 70 80 90 100
pF1KB6 VVSVVRETESQLLPDVGAIVTCKVSSINSRFAKVHIL--YVGSM--P--LKNSFRG-TIR
.:..: : :.. : : :.. :. . :
XP_016 MARSLASIHALPKYTSCMWGPCLLRTLFEELSAR
10 20 30
110 120 130 140 150 160
pF1KB6 K--EDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGI
: :... : . :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KMSEQLKKT-RLLVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGI
40 50 60 70 80 90
170 180 190
pF1KB6 QMVPISWCEMQCPKTHTKEFRKVARVQPEFLQT
:::::::::::::::::::::::::::::::::
XP_016 QMVPISWCEMQCPKTHTKEFRKVARVQPEFLQT
100 110 120
>>NP_001305295 (OMIM: 606493) exosome complex component (109 aa)
initn: 537 init1: 525 opt: 525 Z-score: 711.5 bits: 137.6 E(85289): 6.8e-33
Smith-Waterman score: 525; 100.0% identity (100.0% similar) in 80 aa overlap (116-195:30-109)
90 100 110 120 130 140
pF1KB6 HILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLT
::::::::::::::::::::::::::::::
NP_001 MWGPCLLRTLFEELSARKMSEQLKKTRLLVEIYKSFRPGDIVLAKVISLGDAQSNYLLT
10 20 30 40 50
150 160 170 180 190
pF1KB6 TAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFRKVARVQPEFLQT
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFRKVARVQPEFLQT
60 70 80 90 100
>>NP_001305294 (OMIM: 606493) exosome complex component (109 aa)
initn: 537 init1: 525 opt: 525 Z-score: 711.5 bits: 137.6 E(85289): 6.8e-33
Smith-Waterman score: 525; 100.0% identity (100.0% similar) in 80 aa overlap (116-195:30-109)
90 100 110 120 130 140
pF1KB6 HILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLT
::::::::::::::::::::::::::::::
NP_001 MWGPCLLRTLFEELSARKMSEQLKKTRLLVEIYKSFRPGDIVLAKVISLGDAQSNYLLT
10 20 30 40 50
150 160 170 180 190
pF1KB6 TAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFRKVARVQPEFLQT
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFRKVARVQPEFLQT
60 70 80 90 100
195 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:11:47 2016 done: Sat Nov 5 00:11:48 2016
Total Scan time: 3.780 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]