FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6861, 179 aa
  1>>>pF1KB6861 179 - 179 aa - 179 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3495+/-0.00053; mu= 14.3059+/- 0.032
 mean_var=80.2147+/-15.810, 0's: 0 Z-trim(115.8): 4  B-trim: 0 in 0/54
 Lambda= 0.143201
 statistics sampled from 16333 (16336) to 16333 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.843), E-opt: 0.2 (0.502), width:  16
 Scan time:  2.170

The best scores are:                                      opt bits E(32554)
CCDS6352.1 NDUFB9 gene_id:4715|Hs108|chr8          ( 179) 1311 279.0 1.1e-75
CCDS83324.1 NDUFB9 gene_id:4715|Hs108|chr8         ( 168) 1016 218.0 2.3e-57


>>CCDS6352.1 NDUFB9 gene_id:4715|Hs108|chr8               (179 aa)
 initn: 1311 init1: 1311 opt: 1311  Z-score: 1472.2  bits: 279.0 E(32554): 1.1e-75
Smith-Waterman score: 1311; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)

               10        20        30        40        50        60
pF1KB6 MAFLASGPYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MAFLASGPYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFA
               70        80        90       100       110       120

              130       140       150       160       170         
pF1KB6 KREQWKKLRRESWEREVKQLQEETPPGGPLTEALPPARKEGDLPPLWWYIVTRPRERPM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KREQWKKLRRESWEREVKQLQEETPPGGPLTEALPPARKEGDLPPLWWYIVTRPRERPM
              130       140       150       160       170         

>>CCDS83324.1 NDUFB9 gene_id:4715|Hs108|chr8              (168 aa)
 initn: 1016 init1: 1016 opt: 1016  Z-score: 1143.2  bits: 218.0 E(32554): 2.3e-57
Smith-Waterman score: 1197; 93.9% identity (93.9% similar) in 179 aa overlap (1-179:1-168)

               10        20        30        40        50        60
pF1KB6 MAFLASGPYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKA
       :::::::::::::::::::::::::::::::::           ::::::::::::::::
CCDS83 MAFLASGPYLTHQQKVLRLYKRALRHLESWCVQ-----------RARFEEHKNEKDMAKA
               10        20        30                   40         

               70        80        90       100       110       120
pF1KB6 TQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 TQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFA
      50        60        70        80        90       100         

              130       140       150       160       170         
pF1KB6 KREQWKKLRRESWEREVKQLQEETPPGGPLTEALPPARKEGDLPPLWWYIVTRPRERPM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 KREQWKKLRRESWEREVKQLQEETPPGGPLTEALPPARKEGDLPPLWWYIVTRPRERPM
     110       120       130       140       150       160        




179 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:05:51 2016 done: Sat Nov  5 00:05:52 2016
 Total Scan time:  2.170 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]