Result of FASTA (ccds) for
pF1KB6860
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6860, 187 aa
1>>>pF1KB6860 187 - 187 aa - 187 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6466+/-0.000658; mu= 17.1868+/- 0.040
mean_var=66.5215+/-13.543, 0's: 0 Z-trim(111.1): 18 B-trim: 0 in 0/49
Lambda= 0.157251
statistics sampled from 12105 (12123) to 12105 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.372), width: 16
Scan time: 1.650
The best scores are: opt bits E(32554)
CCDS10408.1 NME4 gene_id:4833|Hs108|chr16 ( 187) 1278 297.9 2.4e-81
CCDS66886.1 NME4 gene_id:4833|Hs108|chr16 ( 117) 786 186.1 6.9e-48
CCDS10443.1 NME3 gene_id:4832|Hs108|chr16 ( 169) 652 155.8 1.3e-38
CCDS11579.1 NME1 gene_id:4830|Hs108|chr17 ( 152) 621 148.7 1.6e-36
CCDS11578.1 NME1 gene_id:4830|Hs108|chr17 ( 177) 621 148.8 1.7e-36
CCDS11580.1 NME2 gene_id:4831|Hs108|chr17 ( 152) 609 146.0 1e-35
CCDS32682.1 NME2 gene_id:654364|Hs108|chr17 ( 267) 609 146.2 1.5e-35
CCDS73797.1 NME4 gene_id:4833|Hs108|chr16 ( 153) 535 129.2 1.2e-30
CCDS74107.1 NME2 gene_id:4831|Hs108|chr17 ( 82) 328 82.0 1e-16
CCDS44274.1 NME7 gene_id:29922|Hs108|chr1 ( 340) 250 64.9 6.1e-11
CCDS1277.1 NME7 gene_id:29922|Hs108|chr1 ( 376) 250 64.9 6.5e-11
>>CCDS10408.1 NME4 gene_id:4833|Hs108|chr16 (187 aa)
initn: 1278 init1: 1278 opt: 1278 Z-score: 1573.8 bits: 297.9 E(32554): 2.4e-81
Smith-Waterman score: 1278; 100.0% identity (100.0% similar) in 187 aa overlap (1-187:1-187)
10 20 30 40 50 60
pF1KB6 MGGLFWRSALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGGLFWRSALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQ
130 140 150 160 170 180
pF1KB6 HSSIHPA
:::::::
CCDS10 HSSIHPA
>>CCDS66886.1 NME4 gene_id:4833|Hs108|chr16 (117 aa)
initn: 786 init1: 786 opt: 786 Z-score: 973.2 bits: 186.1 E(32554): 6.9e-48
Smith-Waterman score: 786; 100.0% identity (100.0% similar) in 117 aa overlap (71-187:1-117)
50 60 70 80 90 100
pF1KB6 LVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRY
::::::::::::::::::::::::::::::
CCDS66 MKMLQAPESVLAEHYQDLRRKPFYPALIRY
10 20 30
110 120 130 140 150 160
pF1KB6 MSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQ
40 50 60 70 80 90
170 180
pF1KB6 REIQLWFQSSELVSWADGGQHSSIHPA
:::::::::::::::::::::::::::
CCDS66 REIQLWFQSSELVSWADGGQHSSIHPA
100 110
>>CCDS10443.1 NME3 gene_id:4832|Hs108|chr16 (169 aa)
initn: 683 init1: 652 opt: 652 Z-score: 806.8 bits: 155.8 E(32554): 1.3e-38
Smith-Waterman score: 652; 61.8% identity (88.9% similar) in 144 aa overlap (38-181:22-165)
10 20 30 40 50 60
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
:::..:::::::::::::....::::.::
CCDS10 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFK
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
::..:..:: : .: ::: .::..::: :..::.:::::::::.: .:::.:::.:: :
CCDS10 LVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGAT
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
. :.: :::::::: .....:.::.:::::.:.::: :::...::. : :.. :
CCDS10 NPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
120 130 140 150 160
>>CCDS11579.1 NME1 gene_id:4830|Hs108|chr17 (152 aa)
initn: 649 init1: 621 opt: 621 Z-score: 769.4 bits: 148.7 E(32554): 1.6e-36
Smith-Waterman score: 621; 58.3% identity (88.9% similar) in 144 aa overlap (38-181:5-148)
10 20 30 40 50 60
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
:::..:.::::::: :::..:.:::..::
CCDS11 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
10 20 30
70 80 90 100 110 120
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
:::.:..:: :..: ::: ::. .::. .:..:: ::::::::::: :::...:.:.:.:
CCDS11 LVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGET
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
. :.. :::::::: ....::.::.:::::.:..:: :::. :::.... .:.
CCDS11 NPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
100 110 120 130 140 150
>>CCDS11578.1 NME1 gene_id:4830|Hs108|chr17 (177 aa)
initn: 636 init1: 621 opt: 621 Z-score: 768.5 bits: 148.8 E(32554): 1.7e-36
Smith-Waterman score: 621; 58.3% identity (88.9% similar) in 144 aa overlap (38-181:30-173)
10 20 30 40 50 60
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
:::..:.::::::: :::..:.:::..::
CCDS11 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
:::.:..:: :..: ::: ::. .::. .:..:: ::::::::::: :::...:.:.:.:
CCDS11 LVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGET
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
. :.. :::::::: ....::.::.:::::.:..:: :::. :::.... .:.
CCDS11 NPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
120 130 140 150 160 170
>>CCDS11580.1 NME2 gene_id:4831|Hs108|chr17 (152 aa)
initn: 639 init1: 609 opt: 609 Z-score: 754.7 bits: 146.0 E(32554): 1e-35
Smith-Waterman score: 609; 59.4% identity (89.9% similar) in 138 aa overlap (38-175:5-142)
10 20 30 40 50 60
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
:::..:.::::::: :::..:.:::..::
CCDS11 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
10 20 30
70 80 90 100 110 120
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
::.::.:.: : : .:: ::. .::.:.:..::.::::::::::: :::...:.:.:.:
CCDS11 LVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGET
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
. :.. :::::::: ....::.::.::::..:..::.:::. :::..
CCDS11 NPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
100 110 120 130 140 150
>>CCDS32682.1 NME2 gene_id:654364|Hs108|chr17 (267 aa)
initn: 1093 init1: 609 opt: 609 Z-score: 751.5 bits: 146.2 E(32554): 1.5e-35
Smith-Waterman score: 609; 59.4% identity (89.9% similar) in 138 aa overlap (38-175:120-257)
10 20 30 40 50 60
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
:::..:.::::::: :::..:.:::..::
CCDS32 MLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
90 100 110 120 130 140
70 80 90 100 110 120
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
::.::.:.: : : .:: ::. .::.:.:..::.::::::::::: :::...:.:.:.:
CCDS32 LVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGET
150 160 170 180 190 200
130 140 150 160 170 180
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
. :.. :::::::: ....::.::.::::..:..::.:::. :::..
CCDS32 NPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
210 220 230 240 250 260
>--
initn: 519 init1: 498 opt: 498 Z-score: 615.4 bits: 121.1 E(32554): 5.9e-28
Smith-Waterman score: 498; 58.9% identity (89.3% similar) in 112 aa overlap (38-149:5-116)
10 20 30 40 50 60
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
:::..:.::::::: :::..:.:::..::
CCDS32 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
10 20 30
70 80 90 100 110 120
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
:::.:..:: :..: ::: ::. .::. .:..:: ::::::::::: :::...:.:.:.:
CCDS32 LVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGET
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
. :.. :::::::: ....:..
CCDS32 NPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMK
100 110 120 130 140 150
>>CCDS73797.1 NME4 gene_id:4833|Hs108|chr16 (153 aa)
initn: 526 init1: 526 opt: 535 Z-score: 663.9 bits: 129.2 E(32554): 1.2e-30
Smith-Waterman score: 972; 81.8% identity (81.8% similar) in 187 aa overlap (1-187:1-153)
10 20 30 40 50 60
pF1KB6 MGGLFWRSALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MGGLFWRSALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRAS
::::::::::::::: :::::::::::
CCDS73 FERRGFTLVGMKMLQ----------------------------------VWEGYNVVRAS
70 80
130 140 150 160 170 180
pF1KB6 RAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQ
90 100 110 120 130 140
pF1KB6 HSSIHPA
:::::::
CCDS73 HSSIHPA
150
>>CCDS74107.1 NME2 gene_id:4831|Hs108|chr17 (82 aa)
initn: 328 init1: 328 opt: 328 Z-score: 413.7 bits: 82.0 E(32554): 1e-16
Smith-Waterman score: 328; 62.5% identity (88.9% similar) in 72 aa overlap (38-109:5-76)
10 20 30 40 50 60
pF1KB6 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
:::..:.::::::: :::..:.:::..::
CCDS74 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
10 20 30
70 80 90 100 110 120
pF1KB6 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
::.::.:.: : : .:: ::. .::.:.:..::.:::::::
CCDS74 LVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMEHHSWQ
40 50 60 70 80
130 140 150 160 170 180
pF1KB6 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
>>CCDS44274.1 NME7 gene_id:29922|Hs108|chr1 (340 aa)
initn: 249 init1: 134 opt: 250 Z-score: 309.9 bits: 64.9 E(32554): 6.1e-11
Smith-Waterman score: 250; 29.9% identity (68.6% similar) in 137 aa overlap (37-170:55-189)
10 20 30 40 50 60
pF1KB6 RSALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGF
.:.::. .:::.... .:..:. ... ::
CCDS44 FIGNKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAISK--AGEIIEIINKAGF
30 40 50 60 70 80
70 80 90 100 110 120
pF1KB6 TLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGH
:.. .::.. .. . . : . .::. ::.....::..:: ... . ..:
CCDS44 TITKLKMMMLSRKEALDFHVDHQSRPFFNELIQFITTGPIIAMEILRDDAICEWKRLLGP
90 100 110 120 130 140
130 140 150 160 170 180
pF1KB6 TDSAEA---APGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSS
..:. : : .::. :.. ::. :. :: .: ::..:.: ::
CCDS44 ANSGVARTDASESIRALFGTDGIRNAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTN
150 160 170 180 190 200
pF1KB6 IHPA
CCDS44 CTCCIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDM
210 220 230 240 250 260
187 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:10:22 2016 done: Fri Nov 4 14:10:23 2016
Total Scan time: 1.650 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]