FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6855, 178 aa
  1>>>pF1KB6855 178 - 178 aa - 178 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3633+/-0.0007; mu= 12.8216+/- 0.042
 mean_var=72.2554+/-14.262, 0's: 0 Z-trim(110.2): 24  B-trim: 2 in 1/51
 Lambda= 0.150883
 statistics sampled from 11389 (11407) to 11389 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.35), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS1467.1 IL10 gene_id:3586|Hs108|chr1            ( 178) 1187 266.8 4.9e-72


>>CCDS1467.1 IL10 gene_id:3586|Hs108|chr1                 (178 aa)
 initn: 1187 init1: 1187 opt: 1187  Z-score: 1406.8  bits: 266.8 E(32554): 4.9e-72
Smith-Waterman score: 1187; 100.0% identity (100.0% similar) in 178 aa overlap (1-178:1-178)

               10        20        30        40        50        60
pF1KB6 MHSSALLCCLVLLTGVRASPGQGTQSENSCTHFPGNLPNMLRDLRDAFSRVKTFFQMKDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MHSSALLCCLVLLTGVRASPGQGTQSENSCTHFPGNLPNMLRDLRDAFSRVKTFFQMKDQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LDNLLLKESLLEDFKGYLGCQALSEMIQFYLEEVMPQAENQDPDIKAHVNSLGENLKTLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LDNLLLKESLLEDFKGYLGCQALSEMIQFYLEEVMPQAENQDPDIKAHVNSLGENLKTLR
               70        80        90       100       110       120

              130       140       150       160       170        
pF1KB6 LRLRRCHRFLPCENKSKAVEQVKNAFNKLQEKGIYKAMSEFDIFINYIEAYMTMKIRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LRLRRCHRFLPCENKSKAVEQVKNAFNKLQEKGIYKAMSEFDIFINYIEAYMTMKIRN
              130       140       150       160       170        




178 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:11:10 2016 done: Sat Nov  5 20:11:11 2016
 Total Scan time:  1.890 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]