Result of FASTA (omim) for
pF1KB6853
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6853, 177 aa
1>>>pF1KB6853 177 - 177 aa - 177 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.6681+/-0.00046; mu= -11.8313+/- 0.029
mean_var=270.3858+/-56.383, 0's: 0 Z-trim(118.0): 7 B-trim: 39 in 1/54
Lambda= 0.077998
statistics sampled from 30576 (30583) to 30576 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.359), width: 16
Scan time: 6.080
The best scores are: opt bits E(85289)
NP_620167 (OMIM: 615154) DPY30 domain-containing p ( 177) 1122 138.6 5e-33
NP_001255982 (OMIM: 615154) DPY30 domain-containin ( 177) 1122 138.6 5e-33
XP_011537637 (OMIM: 615154) PREDICTED: DPY30 domai ( 177) 1122 138.6 5e-33
XP_005269606 (OMIM: 615154) PREDICTED: DPY30 domai ( 184) 1079 133.8 1.5e-31
XP_005269607 (OMIM: 615154) PREDICTED: DPY30 domai ( 184) 1079 133.8 1.5e-31
XP_011537636 (OMIM: 615154) PREDICTED: DPY30 domai ( 184) 1079 133.8 1.5e-31
XP_016871238 (OMIM: 615154) PREDICTED: DPY30 domai ( 171) 1067 132.4 3.5e-31
>>NP_620167 (OMIM: 615154) DPY30 domain-containing prote (177 aa)
initn: 1122 init1: 1122 opt: 1122 Z-score: 714.0 bits: 138.6 E(85289): 5e-33
Smith-Waterman score: 1122; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB6 MESIYLQKHLGACLTQGLAEVARVRPVDPIEYLALWIYKYKENVTMEQLRQKEMAKLERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 MESIYLQKHLGACLTQGLAEVARVRPVDPIEYLALWIYKYKENVTMEQLRQKEMAKLERE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEMRMNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 RELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEMRMNM
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 ENLVRNEDILHSEEATLDSGKTLAEISDRYGAPNLSRVEELDEPMFSDIALNIDQDL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 ENLVRNEDILHSEEATLDSGKTLAEISDRYGAPNLSRVEELDEPMFSDIALNIDQDL
130 140 150 160 170
>>NP_001255982 (OMIM: 615154) DPY30 domain-containing pr (177 aa)
initn: 1122 init1: 1122 opt: 1122 Z-score: 714.0 bits: 138.6 E(85289): 5e-33
Smith-Waterman score: 1122; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB6 MESIYLQKHLGACLTQGLAEVARVRPVDPIEYLALWIYKYKENVTMEQLRQKEMAKLERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MESIYLQKHLGACLTQGLAEVARVRPVDPIEYLALWIYKYKENVTMEQLRQKEMAKLERE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEMRMNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEMRMNM
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 ENLVRNEDILHSEEATLDSGKTLAEISDRYGAPNLSRVEELDEPMFSDIALNIDQDL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ENLVRNEDILHSEEATLDSGKTLAEISDRYGAPNLSRVEELDEPMFSDIALNIDQDL
130 140 150 160 170
>>XP_011537637 (OMIM: 615154) PREDICTED: DPY30 domain-co (177 aa)
initn: 1122 init1: 1122 opt: 1122 Z-score: 714.0 bits: 138.6 E(85289): 5e-33
Smith-Waterman score: 1122; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB6 MESIYLQKHLGACLTQGLAEVARVRPVDPIEYLALWIYKYKENVTMEQLRQKEMAKLERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MESIYLQKHLGACLTQGLAEVARVRPVDPIEYLALWIYKYKENVTMEQLRQKEMAKLERE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEMRMNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEMRMNM
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 ENLVRNEDILHSEEATLDSGKTLAEISDRYGAPNLSRVEELDEPMFSDIALNIDQDL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENLVRNEDILHSEEATLDSGKTLAEISDRYGAPNLSRVEELDEPMFSDIALNIDQDL
130 140 150 160 170
>>XP_005269606 (OMIM: 615154) PREDICTED: DPY30 domain-co (184 aa)
initn: 1242 init1: 1079 opt: 1079 Z-score: 687.5 bits: 133.8 E(85289): 1.5e-31
Smith-Waterman score: 1079; 97.1% identity (100.0% similar) in 173 aa overlap (1-173:1-173)
10 20 30 40 50 60
pF1KB6 MESIYLQKHLGACLTQGLAEVARVRPVDPIEYLALWIYKYKENVTMEQLRQKEMAKLERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MESIYLQKHLGACLTQGLAEVARVRPVDPIEYLALWIYKYKENVTMEQLRQKEMAKLERE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEMRMNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEMRMNM
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 ENLVRNEDILHSEEATLDSGKTLAEISDRYGAPNLSRVEELDEPMFSDIALNIDQDL
::::::::::::::::::::::::::::::::::::::::::::::::.....
XP_005 ENLVRNEDILHSEEATLDSGKTLAEISDRYGAPNLSRVEELDEPMFSDVSISVFCEKTRF
130 140 150 160 170 180
XP_005 CFCF
>>XP_005269607 (OMIM: 615154) PREDICTED: DPY30 domain-co (184 aa)
initn: 1242 init1: 1079 opt: 1079 Z-score: 687.5 bits: 133.8 E(85289): 1.5e-31
Smith-Waterman score: 1079; 97.1% identity (100.0% similar) in 173 aa overlap (1-173:1-173)
10 20 30 40 50 60
pF1KB6 MESIYLQKHLGACLTQGLAEVARVRPVDPIEYLALWIYKYKENVTMEQLRQKEMAKLERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MESIYLQKHLGACLTQGLAEVARVRPVDPIEYLALWIYKYKENVTMEQLRQKEMAKLERE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEMRMNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEMRMNM
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 ENLVRNEDILHSEEATLDSGKTLAEISDRYGAPNLSRVEELDEPMFSDIALNIDQDL
::::::::::::::::::::::::::::::::::::::::::::::::.....
XP_005 ENLVRNEDILHSEEATLDSGKTLAEISDRYGAPNLSRVEELDEPMFSDVSISVFCEKTRF
130 140 150 160 170 180
XP_005 CFCF
>>XP_011537636 (OMIM: 615154) PREDICTED: DPY30 domain-co (184 aa)
initn: 1242 init1: 1079 opt: 1079 Z-score: 687.5 bits: 133.8 E(85289): 1.5e-31
Smith-Waterman score: 1079; 97.1% identity (100.0% similar) in 173 aa overlap (1-173:1-173)
10 20 30 40 50 60
pF1KB6 MESIYLQKHLGACLTQGLAEVARVRPVDPIEYLALWIYKYKENVTMEQLRQKEMAKLERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MESIYLQKHLGACLTQGLAEVARVRPVDPIEYLALWIYKYKENVTMEQLRQKEMAKLERE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEMRMNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEMRMNM
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 ENLVRNEDILHSEEATLDSGKTLAEISDRYGAPNLSRVEELDEPMFSDIALNIDQDL
::::::::::::::::::::::::::::::::::::::::::::::::.....
XP_011 ENLVRNEDILHSEEATLDSGKTLAEISDRYGAPNLSRVEELDEPMFSDVSISVFCEKTRF
130 140 150 160 170 180
XP_011 CFCF
>>XP_016871238 (OMIM: 615154) PREDICTED: DPY30 domain-co (171 aa)
initn: 1067 init1: 1067 opt: 1067 Z-score: 680.7 bits: 132.4 E(85289): 3.5e-31
Smith-Waterman score: 1067; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168)
10 20 30 40 50 60
pF1KB6 MESIYLQKHLGACLTQGLAEVARVRPVDPIEYLALWIYKYKENVTMEQLRQKEMAKLERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MESIYLQKHLGACLTQGLAEVARVRPVDPIEYLALWIYKYKENVTMEQLRQKEMAKLERE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEMRMNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEMRMNM
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 ENLVRNEDILHSEEATLDSGKTLAEISDRYGAPNLSRVEELDEPMFSDIALNIDQDL
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ENLVRNEDILHSEEATLDSGKTLAEISDRYGAPNLSRVEELDEPMFSDDCL
130 140 150 160 170
177 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 20:17:04 2016 done: Mon Nov 7 20:17:05 2016
Total Scan time: 6.080 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]