FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6825, 165 aa
  1>>>pF1KB6825 165 - 165 aa - 165 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6658+/-0.000588; mu= 16.7501+/- 0.036
 mean_var=68.0558+/-13.373, 0's: 0 Z-trim(112.5): 18  B-trim: 45 in 1/50
 Lambda= 0.155468
 statistics sampled from 13225 (13234) to 13225 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.407), width:  16
 Scan time:  1.980

The best scores are:                                      opt bits E(32554)
CCDS3493.1 CHIC2 gene_id:26511|Hs108|chr4          ( 165) 1160 267.9 1.9e-72
CCDS35335.2 CHIC1 gene_id:53344|Hs108|chrX         ( 224)  941 218.9 1.5e-57
CCDS75993.1 CHIC1 gene_id:53344|Hs108|chrX         ( 204)  721 169.6 9.9e-43


>>CCDS3493.1 CHIC2 gene_id:26511|Hs108|chr4               (165 aa)
 initn: 1160 init1: 1160 opt: 1160  Z-score: 1414.0  bits: 267.9 E(32554): 1.9e-72
Smith-Waterman score: 1160; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KB6 MADFDEIYEEEEDEERALEEQLLKYSPDPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MADFDEIYEEEEDEERALEEQLLKYSPDPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PEEFKASINRVNSCLKKNLPVNVRWLLCGCLCCCCTLGCSMWPVICLSKRTRRSIEKLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PEEFKASINRVNSCLKKNLPVNVRWLLCGCLCCCCTLGCSMWPVICLSKRTRRSIEKLLE
               70        80        90       100       110       120

              130       140       150       160     
pF1KB6 WENNRLYHKLCLHWRLSKRKCETNNMMEYVILIEFLPKTPIFRPD
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS34 WENNRLYHKLCLHWRLSKRKCETNNMMEYVILIEFLPKTPIFRPD
              130       140       150       160     

>>CCDS35335.2 CHIC1 gene_id:53344|Hs108|chrX              (224 aa)
 initn: 970 init1: 923 opt: 941  Z-score: 1146.8  bits: 218.9 E(32554): 1.5e-57
Smith-Waterman score: 941; 78.0% identity (91.1% similar) in 168 aa overlap (5-165:57-224)

                                         10               20       
pF1KB6                           MADFDEIYEEEEDEERA-------LEEQLLKYSP
                                     .:  ::::.::.:        ::.: .:.:
CCDS35 TSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEEEEEEEEEEEEAPPPPRVVSEEHLRRYAP
         30        40        50        60        70        80      

        30        40        50        60        70        80       
pF1KB6 DPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLL
       :::.:::.::.:::::::::..:::: :::::::::::.::.:::.:::: :::::.:::
CCDS35 DPVLVRGAGHITVFGLSNKFDTEFPSVLTGKVAPEEFKTSIGRVNACLKKALPVNVKWLL
         90       100       110       120       130       140      

        90       100       110       120       130       140       
pF1KB6 CGCLCCCCTLGCSMWPVICLSKRTRRSIEKLLEWENNRLYHKLCLHWRLSKRKCETNNMM
       :::::::::::::.::::::.:::::::.::.::::::::::: :::.:.::::::.:::
CCDS35 CGCLCCCCTLGCSLWPVICLNKRTRRSIQKLIEWENNRLYHKLALHWKLTKRKCETSNMM
        150       160       170       180       190       200      

       150       160     
pF1KB6 EYVILIEFLPKTPIFRPD
       ::::::::::: ::::::
CCDS35 EYVILIEFLPKYPIFRPD
        210       220    

>>CCDS75993.1 CHIC1 gene_id:53344|Hs108|chrX              (204 aa)
 initn: 935 init1: 703 opt: 721  Z-score: 880.6  bits: 169.6 E(32554): 9.9e-43
Smith-Waterman score: 768; 68.5% identity (79.8% similar) in 168 aa overlap (5-165:57-204)

                                         10               20       
pF1KB6                           MADFDEIYEEEEDEERA-------LEEQLLKYSP
                                     .:  ::::.::.:        ::.: .:.:
CCDS75 TSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEEEEEEEEEEEEAPPPPRVVSEEHLRRYAP
         30        40        50        60        70        80      

        30        40        50        60        70        80       
pF1KB6 DPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLL
       :::.:::.::.:::::::::..:::: :::::::::::.::.:::.:::: :::::.:::
CCDS75 DPVLVRGAGHITVFGLSNKFDTEFPSVLTGKVAPEEFKTSIGRVNACLKKALPVNVKWLL
         90       100       110       120       130       140      

        90       100       110       120       130       140       
pF1KB6 CGCLCCCCTLGCSMWPVICLSKRTRRSIEKLLEWENNRLYHKLCLHWRLSKRKCETNNMM
       :::::::::::::.::::::.:::::::.::.::::::::::                  
CCDS75 CGCLCCCCTLGCSLWPVICLNKRTRRSIQKLIEWENNRLYHK------------------
        150       160       170       180                          

       150       160     
pF1KB6 EYVILIEFLPKTPIFRPD
         ::::::::: ::::::
CCDS75 --VILIEFLPKYPIFRPD
        190       200    




165 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:03:58 2016 done: Sat Nov  5 00:03:58 2016
 Total Scan time:  1.980 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]