Result of FASTA (ccds) for
pF1KB6820
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6820, 186 aa
1>>>pF1KB6820 186 - 186 aa - 186 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0424+/-0.000936; mu= 14.5882+/- 0.057
mean_var=81.5978+/-17.381, 0's: 0 Z-trim(106.1): 176 B-trim: 778 in 2/48
Lambda= 0.141983
statistics sampled from 8601 (8818) to 8601 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.271), width: 16
Scan time: 1.890
The best scores are: opt bits E(32554)
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 1243 264.0 3.7e-71
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 1182 251.5 2.2e-67
CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1 ( 147) 785 170.1 5.5e-43
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 418 95.0 2.7e-20
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 402 91.7 2.6e-19
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 399 91.1 4e-19
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 399 91.1 4e-19
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 387 88.7 2.2e-18
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 372 85.6 1.9e-17
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 370 85.2 2.5e-17
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 365 84.2 5.1e-17
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 358 83.1 2.5e-16
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 345 80.1 9.2e-16
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 329 76.8 8.6e-15
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 328 76.6 1e-14
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 328 76.6 1e-14
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 325 76.0 1.6e-14
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 323 75.6 2.1e-14
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 321 75.2 2.8e-14
CCDS73510.1 ARL1 gene_id:400|Hs108|chr12 ( 135) 318 74.4 3.2e-14
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 315 74.4 1.4e-13
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 ( 179) 307 72.3 1.9e-13
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 307 72.4 2.4e-13
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 309 73.1 3.2e-13
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 305 72.3 5.8e-13
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 201) 299 70.7 6.4e-13
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 ( 179) 295 69.8 1e-12
CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5 ( 198) 294 69.7 1.3e-12
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 173) 291 69.0 1.8e-12
CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5 ( 204) 286 68.0 4.1e-12
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10 ( 198) 269 64.5 4.5e-11
CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17 ( 179) 266 63.9 6.4e-11
>>CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 (186 aa)
initn: 1243 init1: 1243 opt: 1243 Z-score: 1390.9 bits: 264.0 E(32554): 3.7e-71
Smith-Waterman score: 1243; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
130 140 150 160 170 180
pF1KB6 SKSRRS
::::::
CCDS25 SKSRRS
>>CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 (186 aa)
initn: 1182 init1: 1182 opt: 1182 Z-score: 1323.4 bits: 251.5 E(32554): 2.2e-67
Smith-Waterman score: 1182; 91.9% identity (100.0% similar) in 186 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
:.::...:::::..:::::::::::::::::::::::::::::::.:::::::::::::.
CCDS14 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
::::::::.::::::::::::::::::::.:::::.::::.::::::.::::::::::::
CCDS14 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
:::::::::::::::.:::::.::::::::::::::::::::::::::::::::::::::
CCDS14 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
130 140 150 160 170 180
pF1KB6 SKSRRS
::::::
CCDS14 SKSRRS
>>CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1 (147 aa)
initn: 783 init1: 783 opt: 785 Z-score: 885.2 bits: 170.1 E(32554): 5.5e-43
Smith-Waterman score: 785; 85.2% identity (95.6% similar) in 135 aa overlap (1-134:1-135)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
:.::...:::::..:::::::::::::::::::::::::::::::.:::::::::::::.
CCDS73 MIALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
::::::::.::::::::::::::::::::.:::::.::::.::::::.::::::::::::
CCDS73 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL
70 80 90 100 110 120
130 140 150 160 170
pF1KB6 QGIPVLVLG-NKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ
:::: : . :::
CCDS73 QGIPESVCHPGPRDLLLLHLLQRKGQH
130 140
>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa)
initn: 415 init1: 358 opt: 418 Z-score: 477.9 bits: 95.0 E(32554): 2.7e-20
Smith-Waterman score: 418; 36.5% identity (72.9% similar) in 170 aa overlap (15-183:8-175)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
.: ..::.. ..::. .::::.. . :: : :::::::.. :
CCDS96 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
: :: ...::.::: ..: .:..: :........: :::..:. .:.::: ... ..
CCDS96 TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM
60 70 80 90 100 110
130 140 150 160 170
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEK-DNIDITLQWLIQ
. .:...::.:::.:. ... ::..:. :.::. :: . :.. : :: .
CCDS96 RDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP-SCATSGDGLYEGLTWLTS
120 130 140 150 160 170
180
pF1KB6 HSKSRRS
. ::
CCDS96 NYKS
>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa)
initn: 401 init1: 325 opt: 402 Z-score: 460.0 bits: 91.7 E(32554): 2.6e-19
Smith-Waterman score: 402; 31.6% identity (72.4% similar) in 174 aa overlap (12-185:9-181)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
:..:: :.::.. .:::. .::::.. . :.. :::.:::.. :
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
:... .::.::: ..: .:..: ..........:. :::... .:.:: .: . .:
CCDS15 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
. .::..::.:::::.. .. .:..: ... :. . :.. :.:: ..
CCDS15 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ
120 130 140 150 160 170
pF1KB6 SKSRRS
....
CCDS15 LRNQK
180
>>CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 (181 aa)
initn: 391 init1: 338 opt: 399 Z-score: 456.7 bits: 91.1 E(32554): 4e-19
Smith-Waterman score: 399; 32.8% identity (71.8% similar) in 174 aa overlap (12-185:9-181)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
: ::: .::.. ..::. .::::.. . :. :::.:::.. :
CCDS44 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
: :. ...::.::: .: .:. : ...:..:..:. ::..: :..:: .:.. .:
CCDS44 TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEEL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
. ..:..::.:. .:. ... ....: :..::. .. : . ..: ...::..
CCDS44 RKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVET
120 130 140 150 160 170
pF1KB6 SKSRRS
:::.
CCDS44 LKSRQ
180
>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa)
initn: 401 init1: 335 opt: 399 Z-score: 456.7 bits: 91.1 E(32554): 4e-19
Smith-Waterman score: 399; 31.6% identity (72.4% similar) in 174 aa overlap (12-185:9-181)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
..::. :.::.. .:::. .::::.. . :.. :::.:::.. :
CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
:... .::.::: ..: .:..: ..........:. :::... .:.:: .: . .:
CCDS87 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
. .::..::.:::::.. .. .:..: ... :. . :.. :.:: ..
CCDS87 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQ
120 130 140 150 160 170
pF1KB6 SKSRRS
:...
CCDS87 LKNKK
180
>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa)
initn: 344 init1: 316 opt: 387 Z-score: 443.5 bits: 88.7 E(32554): 2.2e-18
Smith-Waterman score: 387; 31.6% identity (71.3% similar) in 174 aa overlap (12-185:9-180)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
: .: :..:.. .:::. .::::.. . :.. :::.:::.. :
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
:. . .::.::: ..: .:..: ..........:. :::... : .::...:.. .:
CCDS34 EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDEL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
. .::..::.:.:::. ..: .:..:. ...: . . .. :.:: .:
CCDS34 RDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL-SH
120 130 140 150 160 170
pF1KB6 SKSRRS
:.:
CCDS34 ELSKR
180
>>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 (180 aa)
initn: 373 init1: 306 opt: 372 Z-score: 426.9 bits: 85.6 E(32554): 1.9e-17
Smith-Waterman score: 372; 31.2% identity (70.5% similar) in 173 aa overlap (12-184:9-180)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
: :: :..:.. .:::. .::::.. . :.. :::.:::.. :
CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
:. . .::.::: :.: .:..: ..........:. :::.:. .::...: .:
CCDS28 EYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDEL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
. .:...::.:::::. ... .:..:.....: . . .. :.:: ..
CCDS28 RDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNE
120 130 140 150 160 170
pF1KB6 SKSRRS
..:
CCDS28 LSKR
180
>>CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 (182 aa)
initn: 338 init1: 303 opt: 370 Z-score: 424.6 bits: 85.2 E(32554): 2.5e-17
Smith-Waterman score: 370; 32.9% identity (74.9% similar) in 167 aa overlap (19-185:16-181)
10 20 30 40 50 60
pF1KB6 MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV
.:... :.::. .::::... .:: ..:. . :: :::...:
CCDS75 MGLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSV
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL
. . ...:::::: ..: .:. : .... ..:.::.:::...: . .:: .::.. .:
CCDS75 QSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH
. .:::...::.:: .: ... : .:: .:.:: : : .... ..:. ..
CCDS75 SCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN
120 130 140 150 160 170
pF1KB6 SKSRRS
....
CCDS75 VNAKKK
180
186 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:04:56 2016 done: Sat Nov 5 04:04:57 2016
Total Scan time: 1.890 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]