FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6816, 185 aa
  1>>>pF1KB6816 185 - 185 aa - 185 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4316+/-0.000767; mu= 8.2582+/- 0.046
 mean_var=92.8007+/-18.210, 0's: 0 Z-trim(110.8): 8  B-trim: 6 in 1/50
 Lambda= 0.133137
 statistics sampled from 11872 (11874) to 11872 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.365), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS47067.1 CSN1S1 gene_id:1446|Hs108|chr4         ( 185) 1243 248.1 2.4e-66
CCDS54769.1 CSN1S1 gene_id:1446|Hs108|chr4         ( 176)  824 167.6 3.8e-42


>>CCDS47067.1 CSN1S1 gene_id:1446|Hs108|chr4              (185 aa)
 initn: 1243 init1: 1243 opt: 1243  Z-score: 1304.8  bits: 248.1 E(32554): 2.4e-66
Smith-Waterman score: 1243; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)

               10        20        30        40        50        60
pF1KB6 MRLLILTCLVAVALARPKLPLRYPERLQNPSESSEPIPLESREEYMNGMNRQRNILREKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MRLLILTCLVAVALARPKLPLRYPERLQNPSESSEPIPLESREEYMNGMNRQRNILREKQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TDEIKDTRNESTQNCVVAEPEKMESSISSSSEEMSLSKCAEQFCRLNEYNQLQLQAAHAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TDEIKDTRNESTQNCVVAEPEKMESSISSSSEEMSLSKCAEQFCRLNEYNQLQLQAAHAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EQIRRMNENSHVQVPFQQLNQLAAYPYAVWYYPQIMQYVPFPPFSDISNPTAHENYEKNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EQIRRMNENSHVQVPFQQLNQLAAYPYAVWYYPQIMQYVPFPPFSDISNPTAHENYEKNN
              130       140       150       160       170       180

            
pF1KB6 VMLQW
       :::::
CCDS47 VMLQW
            

>>CCDS54769.1 CSN1S1 gene_id:1446|Hs108|chr4              (176 aa)
 initn: 927 init1: 605 opt: 824  Z-score: 870.1  bits: 167.6 E(32554): 3.8e-42
Smith-Waterman score: 1146; 95.1% identity (95.1% similar) in 185 aa overlap (1-185:1-176)

               10        20        30        40        50        60
pF1KB6 MRLLILTCLVAVALARPKLPLRYPERLQNPSESSEPIPLESREEYMNGMNRQRNILREKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS54 MRLLILTCLVAVALARPKLPLRYPERLQNPSESSEPIPLESREEYMNGMNR-RNILREKQ
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KB6 TDEIKDTRNESTQNCVVAEPEKMESSISSSSEEMSLSKCAEQFCRLNEYNQLQLQAAHAQ
       :::::::::::::::::::::::::::::::::        :::::::::::::::::::
CCDS54 TDEIKDTRNESTQNCVVAEPEKMESSISSSSEE--------QFCRLNEYNQLQLQAAHAQ
      60        70        80        90               100       110 

              130       140       150       160       170       180
pF1KB6 EQIRRMNENSHVQVPFQQLNQLAAYPYAVWYYPQIMQYVPFPPFSDISNPTAHENYEKNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EQIRRMNENSHVQVPFQQLNQLAAYPYAVWYYPQIMQYVPFPPFSDISNPTAHENYEKNN
             120       130       140       150       160       170 

            
pF1KB6 VMLQW
       :::::
CCDS54 VMLQW
            




185 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:14:10 2016 done: Sat Nov  5 04:14:10 2016
 Total Scan time:  1.890 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]