Result of FASTA (ccds) for
pF1KB6813
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6813, 160 aa
1>>>pF1KB6813 160 - 160 aa - 160 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4019+/-0.000646; mu= 11.9657+/- 0.039
mean_var=71.0484+/-13.696, 0's: 0 Z-trim(110.7): 23 B-trim: 68 in 1/54
Lambda= 0.152159
statistics sampled from 11823 (11835) to 11823 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.364), width: 16
Scan time: 1.630
The best scores are: opt bits E(32554)
CCDS31836.1 PTGES3 gene_id:10728|Hs108|chr12 ( 160) 1146 259.9 5e-70
CCDS73485.1 PTGES3 gene_id:10728|Hs108|chr12 ( 164) 1139 258.3 1.5e-69
CCDS61160.1 PTGES3 gene_id:10728|Hs108|chr12 ( 139) 906 207.1 3.2e-54
CCDS61159.1 PTGES3 gene_id:10728|Hs108|chr12 ( 130) 687 159.0 9e-40
CCDS61158.1 PTGES3 gene_id:10728|Hs108|chr12 ( 127) 472 111.8 1.4e-25
CCDS45691.1 AARSD1 gene_id:100885850|Hs108|chr17 ( 586) 427 102.4 4.7e-22
CCDS11447.1 AARSD1 gene_id:100885850|Hs108|chr17 ( 525) 367 89.2 4e-18
CCDS45692.1 PTGES3L gene_id:100885848|Hs108|chr17 ( 161) 317 77.9 3e-15
>>CCDS31836.1 PTGES3 gene_id:10728|Hs108|chr12 (160 aa)
initn: 1146 init1: 1146 opt: 1146 Z-score: 1370.8 bits: 259.9 E(32554): 5e-70
Smith-Waterman score: 1146; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160)
10 20 30 40 50 60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
70 80 90 100 110 120
130 140 150 160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
::::::::::::::::::::::::::::::::::::::::
CCDS31 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
130 140 150 160
>>CCDS73485.1 PTGES3 gene_id:10728|Hs108|chr12 (164 aa)
initn: 1139 init1: 1139 opt: 1139 Z-score: 1362.3 bits: 258.3 E(32554): 1.5e-69
Smith-Waterman score: 1139; 100.0% identity (100.0% similar) in 159 aa overlap (2-160:6-164)
10 20 30 40 50
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MSLEKQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
70 80 90 100 110 120
120 130 140 150 160
pF1KB6 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
130 140 150 160
>>CCDS61160.1 PTGES3 gene_id:10728|Hs108|chr12 (139 aa)
initn: 901 init1: 901 opt: 906 Z-score: 1086.9 bits: 207.1 E(32554): 3.2e-54
Smith-Waterman score: 945; 86.9% identity (86.9% similar) in 160 aa overlap (1-160:1-139)
10 20 30 40 50 60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
70 80 90 100 110 120
130 140 150 160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
::::: ::::::::::::::
CCDS61 DRFSE---------------------DSQDSDDEKMPDLE
130
>>CCDS61159.1 PTGES3 gene_id:10728|Hs108|chr12 (130 aa)
initn: 692 init1: 677 opt: 687 Z-score: 827.5 bits: 159.0 E(32554): 9e-40
Smith-Waterman score: 850; 81.2% identity (81.2% similar) in 160 aa overlap (1-160:1-130)
10 20 30 40 50 60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
:::::::::::::::::::::::::::::::::::
CCDS61 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAK-------------------------
70 80 90
130 140 150 160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
:::::::::::::::::::::::::::::::::::
CCDS61 -----MMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
100 110 120 130
>>CCDS61158.1 PTGES3 gene_id:10728|Hs108|chr12 (127 aa)
initn: 900 init1: 472 opt: 472 Z-score: 572.6 bits: 111.8 E(32554): 1.4e-25
Smith-Waterman score: 838; 79.4% identity (79.4% similar) in 160 aa overlap (1-160:1-127)
10 20 30 40 50 60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
:: :::::::::::::::::::::::::
CCDS61 PN---------------------------------LNWLSVDFNNWKDWEDDSDEDMSNF
70 80
130 140 150 160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
::::::::::::::::::::::::::::::::::::::::
CCDS61 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
90 100 110 120
>>CCDS45691.1 AARSD1 gene_id:100885850|Hs108|chr17 (586 aa)
initn: 444 init1: 272 opt: 427 Z-score: 509.4 bits: 102.4 E(32554): 4.7e-22
Smith-Waterman score: 427; 42.4% identity (71.5% similar) in 144 aa overlap (2-145:47-187)
10 20 30
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNF
: : . :::: :::.::::::: ::.: .
CCDS45 SCWGRPQDLKIAAPAWNSKCHPGAGAAMARQHARTLWYDRPRYVFMEFCVEDSTDVHVLI
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB6 EKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTK
: ...::: ..:. . :::... .. .::. ::..::: : .:: . .::::::
CCDS45 EDHRIVFSC-KNADGVELYNEIEFYAKVNSKDSQDKRSSRSITCFVRKWKEKVAWPRLTK
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB6 ERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDS
: : ::::::.::.::: : . .... ....:...... . : .: :
CCDS45 EDIKPVWLSVDFDNWRDWEGDEEMELAHVEHYAELLKKVSTKRPP--PAMDDLDFTTTVV
140 150 160 170 180 190
160
pF1KB6 DDEKMPDLE
CCDS45 SCCPAELQTEGSNGKKEVLSGFQVVLEDTVLFPEGGGQPDDRGTINDISVLRVTRRGEQA
200 210 220 230 240 250
>>CCDS11447.1 AARSD1 gene_id:100885850|Hs108|chr17 (525 aa)
initn: 384 init1: 272 opt: 367 Z-score: 439.0 bits: 89.2 E(32554): 4e-18
Smith-Waterman score: 367; 40.3% identity (72.1% similar) in 129 aa overlap (17-145:1-126)
10 20 30 40 50 60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
.::::::: ::.: .: ...::: ..:. . :::... ..
CCDS11 MEFCVEDSTDVHVLIEDHRIVFSC-KNADGVELYNEIEFYAKVN
10 20 30 40
70 80 90 100 110 120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
.::. ::..::: : .:: . .::::::: : ::::::.::.::: : . ....
CCDS11 SKDSQDKRSSRSITCFVRKWKEKVAWPRLTKEDIKPVWLSVDFDNWRDWEGDEEMELAHV
50 60 70 80 90 100
130 140 150 160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
....:...... . : .: :
CCDS11 EHYAELLKKVSTKRPP--PAMDDLDFTTTVVSCCPAELQTEGSNGKKEVLSGFQVVLEDT
110 120 130 140 150 160
>>CCDS45692.1 PTGES3L gene_id:100885848|Hs108|chr17 (161 aa)
initn: 324 init1: 277 opt: 317 Z-score: 387.2 bits: 77.9 E(32554): 3e-15
Smith-Waterman score: 317; 39.1% identity (72.7% similar) in 110 aa overlap (44-153:50-157)
20 30 40 50 60 70
pF1KB6 YVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSI
.:. . :::... .. .::. ::..:::
CCDS45 GRPQDLKIAAPAWNSKCHPGAGAAMARCKNADGVELYNEIEFYAKVNSKDSQDKRSSRSI
20 30 40 50 60 70
80 90 100 110 120 130
pF1KB6 LCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGD
: .:: . .::::::: : ::::::.::.::: : . .... ....:......
CCDS45 TCFVRKWKEKVAWPRLTKEDIKPVWLSVDFDNWRDWEGDEEMELAHVEHYAELLKKVSTK
80 90 100 110 120 130
140 150 160
pF1KB6 EDVDLPEVDGADDDSQDSDDEKMPDLE
. : .: ::::...::
CCDS45 RPP--PAMDDLDDDSDSADDATSN
140 150 160
160 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:02:47 2016 done: Sat Nov 5 00:02:47 2016
Total Scan time: 1.630 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]