FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6811, 160 aa
  1>>>pF1KB6811 160 - 160 aa - 160 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1656+/-0.000678; mu= 12.0093+/- 0.041
 mean_var=51.8238+/-10.293, 0's: 0 Z-trim(107.5): 11  B-trim: 42 in 1/52
 Lambda= 0.178160
 statistics sampled from 9603 (9611) to 9603 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.295), width:  16
 Scan time:  1.520

The best scores are:                                      opt bits E(32554)
CCDS32868.1 GADD45B gene_id:4616|Hs108|chr19       ( 160) 1051 277.6 2.3e-75
CCDS640.1 GADD45A gene_id:1647|Hs108|chr1          ( 165)  607 163.4 5.4e-41
CCDS6686.1 GADD45G gene_id:10912|Hs108|chr9        ( 159)  578 156.0 9.2e-39
CCDS55605.1 GADD45A gene_id:1647|Hs108|chr1        ( 131)  466 127.2 3.6e-30


>>CCDS32868.1 GADD45B gene_id:4616|Hs108|chr19            (160 aa)
 initn: 1051 init1: 1051 opt: 1051  Z-score: 1466.4  bits: 277.6 E(32554): 2.3e-75
Smith-Waterman score: 1051; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160)

               10        20        30        40        50        60
pF1KB6 MTLEELVACDNAAQKMQTVTAAVEELLVAAQRQDRLTVGVYESAKLMNVDPDSVVLCLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MTLEELVACDNAAQKMQTVTAAVEELLVAAQRQDRLTVGVYESAKLMNVDPDSVVLCLLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IDEEEEDDIALQIHFTLIQSFCCDNDINIVRVSGMQRLAQLLGEPAETQGTTEARDLHCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IDEEEEDDIALQIHFTLIQSFCCDNDINIVRVSGMQRLAQLLGEPAETQGTTEARDLHCL
               70        80        90       100       110       120

              130       140       150       160
pF1KB6 LVTNPHTDAWKSHGLVEVASYCEESRGNNQWVPYISLQER
       ::::::::::::::::::::::::::::::::::::::::
CCDS32 LVTNPHTDAWKSHGLVEVASYCEESRGNNQWVPYISLQER
              130       140       150       160

>>CCDS640.1 GADD45A gene_id:1647|Hs108|chr1               (165 aa)
 initn: 616 init1: 413 opt: 607  Z-score: 849.4  bits: 163.4 E(32554): 5.4e-41
Smith-Waterman score: 607; 55.8% identity (78.8% similar) in 165 aa overlap (1-160:1-165)

               10        20        30        40        50        60
pF1KB6 MTLEELVACDNAAQKMQTVTAAVEELLVAAQRQDRLTVGVYESAKLMNVDPDSVVLCLLA
       :::::. : .. ...:. :  :.::.:  :  :  .::::::.:::.:::::.:::::::
CCDS64 MTLEEFSAGEQKTERMDKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLA
               10        20        30        40        50        60

               70        80        90       100            110     
pF1KB6 IDEEEEDDIALQIHFTLIQSFCCDNDINIVRVSGMQRLAQLL-----GEPAETQGTTEAR
        ::... :.::::::::::.:::.:::::.:::.  :::.::     . :: ..:. .  
CCDS64 ADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLLETDAGPAASEGAEQPP
               70        80        90       100       110       120

         120       130       140       150       160
pF1KB6 DLHCLLVTNPHTDAWKSHGLVEVASYCEESRGNNQWVPYISLQER
       ::::.::::::.. ::. .: ..  .:.:::  .:::: :.: ::
CCDS64 DLHCVLVTNPHSSQWKDPALSQLICFCRESRYMDQWVPVINLPER
              130       140       150       160     

>>CCDS6686.1 GADD45G gene_id:10912|Hs108|chr9             (159 aa)
 initn: 581 init1: 389 opt: 578  Z-score: 809.4  bits: 156.0 E(32554): 9.2e-39
Smith-Waterman score: 578; 55.6% identity (80.9% similar) in 162 aa overlap (1-159:1-159)

               10           20        30        40        50       
pF1KB6 MTLEELVACDNAAQ---KMQTVTAAVEELLVAAQRQDRLTVGVYESAKLMNVDPDSVVLC
       :::::. . :.. .   .:: .  :..:::..::::  ::.:::::::..:::::.:..:
CCDS66 MTLEEVRGQDTVPESTARMQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFC
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 LLAIDEEEEDDIALQIHFTLIQSFCCDNDINIVRVSGMQRLAQLLGEPAETQGTTEARDL
       .::  ::.: ::::::::::::.:::.:::.::::. .:::: ..:  .:  :.    ::
CCDS66 VLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGA-GEEAGAP--GDL
               70        80        90       100        110         

       120       130       140       150       160
pF1KB6 HCLLVTNPHTDAWKSHGLVEVASYCEESRGNNQWVPYISLQER
       ::.:..::. ::::. .: ... .:::::. :.::: :.: : 
CCDS66 HCILISNPNEDAWKDPALEKLSLFCEESRSVNDWVPSITLPE 
       120       130       140       150          

>>CCDS55605.1 GADD45A gene_id:1647|Hs108|chr1             (131 aa)
 initn: 494 init1: 272 opt: 466  Z-score: 655.2  bits: 127.2 E(32554): 3.6e-30
Smith-Waterman score: 466; 57.8% identity (80.2% similar) in 116 aa overlap (50-160:16-131)

      20        30        40        50        60        70         
pF1KB6 TAAVEELLVAAQRQDRLTVGVYESAKLMNVDPDSVVLCLLAIDEEEEDDIALQIHFTLIQ
                                     :::.::::::: ::... :.::::::::::
CCDS55                MTLEEFSAGEQKTESDPDNVVLCLLAADEDDDRDVALQIHFTLIQ
                              10        20        30        40     

      80        90       100            110       120       130    
pF1KB6 SFCCDNDINIVRVSGMQRLAQLL-----GEPAETQGTTEARDLHCLLVTNPHTDAWKSHG
       .:::.:::::.:::.  :::.::     . :: ..:. .  ::::.::::::.. ::. .
CCDS55 AFCCENDINILRVSNPGRLAELLLLETDAGPAASEGAEQPPDLHCVLVTNPHSSQWKDPA
          50        60        70        80        90       100     

          140       150       160
pF1KB6 LVEVASYCEESRGNNQWVPYISLQER
       : ..  .:.:::  .:::: :.: ::
CCDS55 LSQLICFCRESRYMDQWVPVINLPER
         110       120       130 




160 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:32:30 2016 done: Fri Nov  4 14:32:30 2016
 Total Scan time:  1.520 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]