FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6810, 185 aa
  1>>>pF1KB6810 185 - 185 aa - 185 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0220+/-0.000718; mu= 11.3543+/- 0.044
 mean_var=109.2256+/-21.397, 0's: 0 Z-trim(112.5): 28  B-trim: 133 in 2/52
 Lambda= 0.122719
 statistics sampled from 13200 (13228) to 13200 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.406), width:  16
 Scan time:  1.750

The best scores are:                                      opt bits E(32554)
CCDS11525.1 CBX1 gene_id:10951|Hs108|chr17         ( 185) 1238 228.8 1.5e-60
CCDS5398.1 CBX3 gene_id:11335|Hs108|chr7           ( 183)  848 159.7   9e-40
CCDS8875.1 CBX5 gene_id:23468|Hs108|chr12          ( 191)  781 147.9 3.4e-36


>>CCDS11525.1 CBX1 gene_id:10951|Hs108|chr17              (185 aa)
 initn: 1238 init1: 1238 opt: 1238  Z-score: 1200.6  bits: 228.8 E(32554): 1.5e-60
Smith-Waterman score: 1238; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)

               10        20        30        40        50        60
pF1KB6 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK
              130       140       150       160       170       180

            
pF1KB6 KDDKN
       :::::
CCDS11 KDDKN
            

>>CCDS5398.1 CBX3 gene_id:11335|Hs108|chr7                (183 aa)
 initn: 848 init1: 449 opt: 848  Z-score: 827.5  bits: 159.7 E(32554): 9e-40
Smith-Waterman score: 848; 73.6% identity (88.2% similar) in 178 aa overlap (1-178:11-181)

                         10        20        30        40        50
pF1KB6           MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDN
                 :::::: :. ..: : : ::.:::::::::::.:::::.::::::.: ::
CCDS53 MASNKTTLQKMGKKQNGKS-KKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADN
               10         20        30        40        50         

               60        70        80        90       100       110
pF1KB6 TWEPEENLDCPDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKP
       :::::::::::.::  ::.:::...: :   : :::. ::::  ...:: :::.. ..::
CCDS53 TWEPEENLDCPELIEAFLNSQKAGKEKD---GTKRKSLSDSE--SDDSKSKKKRDAADKP
      60        70        80           90         100       110    

              120       130       140       150       160       170
pF1KB6 RGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTW
       :::::::.:::::::::::::::::::::.::::::: :::::.::::.::.::::::::
CCDS53 RGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTW
          120       130       140       150       160       170    

              180     
pF1KB6 HSYPSEDDDKKDDKN
       :: : ::.       
CCDS53 HSCP-EDEAQ     
           180        

>>CCDS8875.1 CBX5 gene_id:23468|Hs108|chr12               (191 aa)
 initn: 817 init1: 414 opt: 781  Z-score: 763.2  bits: 147.9 E(32554): 3.4e-36
Smith-Waterman score: 781; 63.9% identity (82.7% similar) in 191 aa overlap (1-183:1-187)

               10        20        30        40        50        60
pF1KB6 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC
       :::: .:. ..    :.:::::::::::::::::.:::::::::::.: ::::::.::::
CCDS88 MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC
                10        20        30        40        50         

               70              80         90       100        110  
pF1KB6 PDLIAEFLQSQKTAHE------TDKSEGGKRKAD-SDSEDKGEESKPKKKKEESEK-PRG
       :.::.::... :  .:       .:::..:::.. :.: :   . : :::.:.:.   ::
CCDS88 PELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSAD---DIKSKKKREQSNDIARG
      60        70        80        90          100       110      

            120       130       140       150       160       170  
pF1KB6 FARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHS
       : ::::::.::::::: :.::::::::..:::::: ::::::::::.::.:::::::::.
CCDS88 FERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHA
        120       130       140       150       160       170      

            180       
pF1KB6 YPSEDDDKKDDKN  
       :: . ..:. .    
CCDS88 YPEDAENKEKETAKS
        180       190 




185 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:09:29 2016 done: Sat Nov  5 20:09:29 2016
 Total Scan time:  1.750 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]