FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6807, 159 aa
  1>>>pF1KB6807 159 - 159 aa - 159 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7492+/-0.000772; mu= 12.2511+/- 0.047
 mean_var=101.2752+/-19.923, 0's: 0 Z-trim(110.9): 11  B-trim: 11 in 1/52
 Lambda= 0.127445
 statistics sampled from 11919 (11924) to 11919 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.366), width:  16
 Scan time:  1.340

The best scores are:                                      opt bits E(32554)
CCDS2845.1 RPL29 gene_id:6159|Hs108|chr3           ( 159) 1034 199.4 7.7e-52


>>CCDS2845.1 RPL29 gene_id:6159|Hs108|chr3                (159 aa)
 initn: 1034 init1: 1034 opt: 1034  Z-score: 1044.2  bits: 199.4 E(32554): 7.7e-52
Smith-Waterman score: 1034; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KB6 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 NAKAMSARAEAIKALVKPKEVKPKIPKGVSRKLDRLAYIAHPKLGKRARARIAKGLRLCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 NAKAMSARAEAIKALVKPKEVKPKIPKGVSRKLDRLAYIAHPKLGKRARARIAKGLRLCR
               70        80        90       100       110       120

              130       140       150         
pF1KB6 PKAKAKAKAKDQTKAQAAAPASVPAQAPKRTQAPTKASE
       :::::::::::::::::::::::::::::::::::::::
CCDS28 PKAKAKAKAKDQTKAQAAAPASVPAQAPKRTQAPTKASE
              130       140       150         




159 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:20:44 2016 done: Sat Nov  5 00:20:44 2016
 Total Scan time:  1.340 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]