FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6805, 159 aa
  1>>>pF1KB6805 159 - 159 aa - 159 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9205+/-0.000794; mu= 13.9847+/- 0.048
 mean_var=55.3745+/-11.191, 0's: 0 Z-trim(106.5): 11  B-trim: 489 in 1/48
 Lambda= 0.172353
 statistics sampled from 8992 (8995) to 8992 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.276), width:  16
 Scan time:  1.770

The best scores are:                                      opt bits E(32554)
CCDS3545.1 JCHAIN gene_id:3512|Hs108|chr4          ( 159) 1070 273.7 3.4e-74


>>CCDS3545.1 JCHAIN gene_id:3512|Hs108|chr4               (159 aa)
 initn: 1070 init1: 1070 opt: 1070  Z-score: 1445.6  bits: 273.7 E(32554): 3.4e-74
Smith-Waterman score: 1070; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KB6 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
               70        80        90       100       110       120

              130       140       150         
pF1KB6 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
       :::::::::::::::::::::::::::::::::::::::
CCDS35 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
              130       140       150         




159 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:04:08 2016 done: Sat Nov  5 14:04:08 2016
 Total Scan time:  1.770 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]