FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6803, 159 aa
  1>>>pF1KB6803 159 - 159 aa - 159 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0432+/-0.000613; mu= 12.7949+/- 0.037
 mean_var=52.0972+/-10.447, 0's: 0 Z-trim(109.1): 11  B-trim: 0 in 0/51
 Lambda= 0.177692
 statistics sampled from 10656 (10664) to 10656 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.328), width:  16
 Scan time:  1.910

The best scores are:                                      opt bits E(32554)
CCDS6686.1 GADD45G gene_id:10912|Hs108|chr9        ( 159) 1062 279.5 6.1e-76
CCDS640.1 GADD45A gene_id:1647|Hs108|chr1          ( 165)  583 156.7 5.8e-39
CCDS32868.1 GADD45B gene_id:4616|Hs108|chr19       ( 160)  578 155.4 1.4e-38
CCDS55605.1 GADD45A gene_id:1647|Hs108|chr1        ( 131)  459 124.9 1.7e-29


>>CCDS6686.1 GADD45G gene_id:10912|Hs108|chr9             (159 aa)
 initn: 1062 init1: 1062 opt: 1062  Z-score: 1476.9  bits: 279.5 E(32554): 6.1e-76
Smith-Waterman score: 1062; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KB6 MTLEEVRGQDTVPESTARMQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MTLEEVRGQDTVPESTARMQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGAGEEAGAPGDLHCI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 VLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGAGEEAGAPGDLHCI
               70        80        90       100       110       120

              130       140       150         
pF1KB6 LISNPNEDAWKDPALEKLSLFCEESRSVNDWVPSITLPE
       :::::::::::::::::::::::::::::::::::::::
CCDS66 LISNPNEDAWKDPALEKLSLFCEESRSVNDWVPSITLPE
              130       140       150         

>>CCDS640.1 GADD45A gene_id:1647|Hs108|chr1               (165 aa)
 initn: 375 init1: 375 opt: 583  Z-score: 813.0  bits: 156.7 E(32554): 5.8e-39
Smith-Waterman score: 583; 54.5% identity (77.2% similar) in 167 aa overlap (1-159:1-164)

               10        20        30        40        50        60
pF1KB6 MTLEEVRGQDTVPESTARMQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFC
       :::::  . .   ..: ::. .: ::.:.: .:  :  .:.::::.::.::::::::..:
CCDS64 MTLEEFSAGE---QKTERMDKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLC
               10           20        30        40        50       

               70        80        90       100               110  
pF1KB6 VLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIV--------GAGEEAG
       .::: :.:. :.::::::::::::::::::.:.::..  ::: ..        .:.: : 
CCDS64 LLAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLLETDAGPAASEGAE
        60        70        80        90       100       110       

            120       130       140       150          
pF1KB6 APGDLHCILISNPNEDAWKDPALEKLSLFCEESRSVNDWVPSITLPE 
        : ::::.:..::. . :::::: .:  ::.::: ...::: :.::: 
CCDS64 QPPDLHCVLVTNPHSSQWKDPALSQLICFCRESRYMDQWVPVINLPER
       120       130       140       150       160     

>>CCDS32868.1 GADD45B gene_id:4616|Hs108|chr19            (160 aa)
 initn: 581 init1: 389 opt: 578  Z-score: 806.3  bits: 155.4 E(32554): 1.4e-38
Smith-Waterman score: 578; 54.9% identity (80.2% similar) in 162 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KB6 MTLEEVRGQDTVPESTARMQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFC
       :::::. . :.. .   .:: .  :..:::..::::  ::.:::::::..:::::.:..:
CCDS32 MTLEELVACDNAAQ---KMQTVTAAVEELLVAAQRQDRLTVGVYESAKLMNVDPDSVVLC
               10           20        30        40        50       

               70        80        90       100       110          
pF1KB6 VLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGAGEEAGAPG---DL
       .::  ::.: ::::::::::::.:::.:::.::::. .:::: ..:   :. .     ::
CCDS32 LLAIDEEEEDDIALQIHFTLIQSFCCDNDINIVRVSGMQRLAQLLGEPAETQGTTEARDL
        60        70        80        90       100       110       

       120       130       140       150          
pF1KB6 HCILISNPNEDAWKDPALEKLSLFCEESRSVNDWVPSITLPE 
       ::.:..::. ::::. .: ... .:::::. :.::: :.: : 
CCDS32 HCLLVTNPHTDAWKSHGLVEVASYCEESRGNNQWVPYISLQER
       120       130       140       150       160

>>CCDS55605.1 GADD45A gene_id:1647|Hs108|chr1             (131 aa)
 initn: 281 init1: 262 opt: 459  Z-score: 642.8  bits: 124.9 E(32554): 1.7e-29
Smith-Waterman score: 459; 57.4% identity (79.1% similar) in 115 aa overlap (53-159:16-130)

             30        40        50        60        70        80  
pF1KB6 GKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAAGEEDEGDIALQIHFTLIQ
                                     :::::..:.::: :.:. :.::::::::::
CCDS55                MTLEEFSAGEQKTESDPDNVVLCLLAADEDDDRDVALQIHFTLIQ
                              10        20        30        40     

             90       100               110       120       130    
pF1KB6 AFCCENDIDIVRVGDVQRLAAIV--------GAGEEAGAPGDLHCILISNPNEDAWKDPA
       ::::::::.:.::..  ::: ..        .:.: :  : ::::.:..::. . :::::
CCDS55 AFCCENDINILRVSNPGRLAELLLLETDAGPAASEGAEQPPDLHCVLVTNPHSSQWKDPA
          50        60        70        80        90       100     

          140       150          
pF1KB6 LEKLSLFCEESRSVNDWVPSITLPE 
       : .:  ::.::: ...::: :.::: 
CCDS55 LSQLICFCRESRYMDQWVPVINLPER
         110       120       130 




159 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:08:53 2016 done: Sat Nov  5 00:08:53 2016
 Total Scan time:  1.910 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]