Result of FASTA (omim) for
pF1KB6795
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6795, 128 aa
1>>>pF1KB6795 128 - 128 aa - 128 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0390+/-0.000303; mu= 13.3437+/- 0.019
mean_var=76.7168+/-14.958, 0's: 0 Z-trim(118.1): 123 B-trim: 0 in 0/54
Lambda= 0.146430
statistics sampled from 30573 (30715) to 30573 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.36), width: 16
Scan time: 4.370
The best scores are: opt bits E(85289)
NP_002092 (OMIM: 110750,611162,616089) glycophorin ( 128) 846 187.0 6.9e-48
XP_006712523 (OMIM: 110750,611162,616089) PREDICTE ( 122) 727 161.9 2.5e-40
NP_001243513 (OMIM: 110750,611162,616089) glycopho ( 107) 688 153.6 6.8e-38
NP_058131 (OMIM: 110750,611162,616089) glycophorin ( 109) 609 136.9 7.2e-33
NP_054860 (OMIM: 604569,610042,612100) contactin-a (1331) 269 66.0 1.9e-10
XP_016872949 (OMIM: 605686) PREDICTED: cell adhesi ( 295) 218 54.7 1.1e-07
NP_001287973 (OMIM: 605686) cell adhesion molecule ( 453) 220 55.3 1.1e-07
XP_016872947 (OMIM: 605686) PREDICTED: cell adhesi ( 402) 218 54.8 1.4e-07
NP_055148 (OMIM: 605686) cell adhesion molecule 1 ( 442) 218 54.8 1.5e-07
NP_001243431 (OMIM: 609938) cell adhesion molecule ( 327) 204 51.8 9.3e-07
NP_001243432 (OMIM: 609938) cell adhesion molecule ( 327) 204 51.8 9.3e-07
XP_006713144 (OMIM: 609938) PREDICTED: cell adhesi ( 435) 204 51.9 1.1e-06
NP_001161146 (OMIM: 609938) cell adhesion molecule ( 435) 204 51.9 1.1e-06
NP_694854 (OMIM: 609938) cell adhesion molecule 2 ( 437) 204 51.9 1.1e-06
XP_016861551 (OMIM: 609938) PREDICTED: cell adhesi ( 449) 204 51.9 1.2e-06
XP_005271551 (OMIM: 605686) PREDICTED: cell adhesi ( 425) 196 50.2 3.6e-06
XP_016872950 (OMIM: 605686) PREDICTED: cell adhesi ( 267) 193 49.4 4e-06
XP_016872948 (OMIM: 605686) PREDICTED: cell adhesi ( 324) 193 49.4 4.6e-06
NP_001091987 (OMIM: 605686) cell adhesion molecule ( 414) 193 49.5 5.5e-06
NP_001287974 (OMIM: 605686) cell adhesion molecule ( 443) 193 49.6 5.8e-06
NP_001287972 (OMIM: 605686) cell adhesion molecule ( 471) 193 49.6 6.1e-06
XP_016872946 (OMIM: 605686) PREDICTED: cell adhesi ( 477) 193 49.6 6.1e-06
NP_001243433 (OMIM: 609938) cell adhesion molecule ( 287) 184 47.5 1.6e-05
NP_001243434 (OMIM: 609938) cell adhesion molecule ( 287) 184 47.5 1.6e-05
XP_016858805 (OMIM: 610519) PREDICTED: contactin-a (1227) 191 49.5 1.7e-05
NP_570129 (OMIM: 610519) contactin-associated prot (1306) 191 49.6 1.7e-05
XP_006712321 (OMIM: 610519) PREDICTED: contactin-a (1307) 191 49.6 1.7e-05
XP_006713145 (OMIM: 609938) PREDICTED: cell adhesi ( 395) 184 47.6 2e-05
XP_016861552 (OMIM: 609938) PREDICTED: cell adhesi ( 397) 184 47.6 2e-05
NP_001161147 (OMIM: 609938) cell adhesion molecule ( 404) 184 47.6 2e-05
NP_001333439 (OMIM: 609743) cell adhesion molecule ( 352) 183 47.4 2.1e-05
NP_001120645 (OMIM: 609743) cell adhesion molecule ( 398) 183 47.4 2.3e-05
NP_067012 (OMIM: 609743) cell adhesion molecule 3 ( 432) 183 47.4 2.5e-05
NP_620063 (OMIM: 600566) neurexin-2-beta isoform b ( 666) 165 43.8 0.00047
NP_001309116 (OMIM: 610518) contactin-associated p ( 836) 166 44.1 0.00048
NP_001309120 (OMIM: 610518) contactin-associated p ( 999) 166 44.2 0.00055
XP_016879294 (OMIM: 610518) PREDICTED: contactin-a ( 999) 166 44.2 0.00055
NP_001309109 (OMIM: 610518) contactin-associated p (1179) 166 44.2 0.00062
XP_016874066 (OMIM: 600566) PREDICTED: neurexin-2- ( 974) 165 43.9 0.00063
XP_011543687 (OMIM: 600566) PREDICTED: neurexin-2- ( 977) 165 43.9 0.00063
NP_001309118 (OMIM: 610518) contactin-associated p (1220) 166 44.2 0.00064
NP_001309108 (OMIM: 610518) contactin-associated p (1228) 166 44.2 0.00064
NP_620481 (OMIM: 610518) contactin-associated prot (1235) 166 44.2 0.00065
NP_001309107 (OMIM: 610518) contactin-associated p (1258) 166 44.3 0.00065
NP_001309119 (OMIM: 610518) contactin-associated p (1260) 166 44.3 0.00066
NP_001309117 (OMIM: 610518) contactin-associated p (1273) 166 44.3 0.00066
XP_011521705 (OMIM: 610518) PREDICTED: contactin-a (1283) 166 44.3 0.00066
NP_001309110 (OMIM: 610518) contactin-associated p (1307) 166 44.3 0.00067
NP_207837 (OMIM: 610518) contactin-associated prot (1308) 166 44.3 0.00067
XP_016874065 (OMIM: 600566) PREDICTED: neurexin-2- (1296) 165 44.1 0.00077
>>NP_002092 (OMIM: 110750,611162,616089) glycophorin-C i (128 aa)
initn: 846 init1: 846 opt: 846 Z-score: 980.7 bits: 187.0 E(85289): 6.9e-48
Smith-Waterman score: 846; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KB6 MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
70 80 90 100 110 120
pF1KB6 SSRKEYFI
::::::::
NP_002 SSRKEYFI
>>XP_006712523 (OMIM: 110750,611162,616089) PREDICTED: g (122 aa)
initn: 727 init1: 727 opt: 727 Z-score: 845.1 bits: 161.9 E(85289): 2.5e-40
Smith-Waterman score: 727; 97.4% identity (98.3% similar) in 115 aa overlap (14-128:8-122)
10 20 30 40 50 60
pF1KB6 MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV
: .:::::::::::::::::::::::::::::::::::::::::::
XP_006 MLTKPQELPRQPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
60 70 80 90 100 110
pF1KB6 SSRKEYFI
::::::::
XP_006 SSRKEYFI
120
>>NP_001243513 (OMIM: 110750,611162,616089) glycophorin- (107 aa)
initn: 688 init1: 688 opt: 688 Z-score: 801.3 bits: 153.6 E(85289): 6.8e-38
Smith-Waterman score: 688; 100.0% identity (100.0% similar) in 107 aa overlap (22-128:1-107)
10 20 30 40 50 60
pF1KB6 MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV
:::::::::::::::::::::::::::::::::::::::
NP_001 MASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV
10 20 30
70 80 90 100 110 120
pF1KB6 VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
40 50 60 70 80 90
pF1KB6 SSRKEYFI
::::::::
NP_001 SSRKEYFI
100
>>NP_058131 (OMIM: 110750,611162,616089) glycophorin-C i (109 aa)
initn: 609 init1: 609 opt: 609 Z-score: 711.0 bits: 136.9 E(85289): 7.2e-33
Smith-Waterman score: 677; 85.2% identity (85.2% similar) in 128 aa overlap (1-128:1-109)
10 20 30 40 50 60
pF1KB6 MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMSGWPDGRMETSTPTIMDIV
:::::::::::::::::::::: :::::::::::::::::::
NP_058 MWSTRSPNSTAWPLSLEPDPGM-------------------SGWPDGRMETSTPTIMDIV
10 20 30 40
70 80 90 100 110 120
pF1KB6 VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 VIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEFAESADAALQGDPALQDAGD
50 60 70 80 90 100
pF1KB6 SSRKEYFI
::::::::
NP_058 SSRKEYFI
>>NP_054860 (OMIM: 604569,610042,612100) contactin-assoc (1331 aa)
initn: 230 init1: 199 opt: 269 Z-score: 308.5 bits: 66.0 E(85289): 1.9e-10
Smith-Waterman score: 269; 40.2% identity (65.6% similar) in 122 aa overlap (8-128:1213-1331)
10 20 30
pF1KB6 MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEP
: : ::.: : :.::. : .
NP_054 QFNQIAPLKAALRQTNASAHVHIQGELVESNCGASPLTLSP---MSSATDPWHLDHLDSA
1190 1200 1210 1220 1230
40 50 60 70 80 90
pF1KB6 DPGMSGWPDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAK
. . : . . . . ..:.::::.: .... : ..:::.::::::::::::
NP_054 SADFPYNPGQGQAIRNGVNRNSAIIGGVIAVVIFTILCTLVFLIRYMFRHKGTYHTNEAK
1240 1250 1260 1270 1280 1290
100 110 120
pF1KB6 GTEFAESADAA-LQGDPALQDAGDSSRKEYFI
:.: ::::::: ...:: . .. : :.::..:
NP_054 GAESAESADAAIMNNDPNFTETIDESKKEWLI
1300 1310 1320 1330
>>XP_016872949 (OMIM: 605686) PREDICTED: cell adhesion m (295 aa)
initn: 223 init1: 168 opt: 218 Z-score: 258.9 bits: 54.7 E(85289): 1.1e-07
Smith-Waterman score: 218; 37.6% identity (68.4% similar) in 117 aa overlap (13-128:186-295)
10 20 30 40
pF1KB6 MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMS
: . : : ....:: :::: ..
XP_016 LNKTDNGTYRCEASNIVGKAHSDYMLYVYDPPTTIPPPTTTTTTTTTTTTTI------LT
160 170 180 190 200
50 60 70 80 90 100
pF1KB6 GWPDGRM-ETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEF
:.: : .. .: .::.::.:.:..... ::... ::. :::::: :.::::..
XP_016 IITDSRAGEEGSIRAVDHAVIGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADD
210 220 230 240 250 260
110 120
pF1KB6 AESADAALQGDPALQDAGDSSRKEYFI
: .::.:. . . :. .. .:::::
XP_016 AADADTAIINAEGGQNNSEE-KKEYFI
270 280 290
>>NP_001287973 (OMIM: 605686) cell adhesion molecule 1 i (453 aa)
initn: 216 init1: 161 opt: 220 Z-score: 258.7 bits: 55.3 E(85289): 1.1e-07
Smith-Waterman score: 220; 37.7% identity (66.4% similar) in 122 aa overlap (13-128:333-453)
10 20 30 40
pF1KB6 MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAE--PDPG
: . : : ....:: :::: :
NP_001 LNKTDNGTYRCEASNIVGKAHSDYMLYVYDPPTTIPPPTTTTTTTTTTTTTILTIITDTT
310 320 330 340 350 360
50 60 70 80 90
pF1KB6 MSGWP---DGRM-ETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEA
. : :.: : .. .: .::.::.:.:..... ::... ::. :::::: :.::
NP_001 ATTEPAVHDSRAGEEGSIRAVDHAVIGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEA
370 380 390 400 410 420
100 110 120
pF1KB6 KGTEFAESADAALQGDPALQDAGDSSRKEYFI
::.. : .::.:. . . :. .. .:::::
NP_001 KGADDAADADTAIINAEGGQNNSEE-KKEYFI
430 440 450
>>XP_016872947 (OMIM: 605686) PREDICTED: cell adhesion m (402 aa)
initn: 223 init1: 168 opt: 218 Z-score: 257.1 bits: 54.8 E(85289): 1.4e-07
Smith-Waterman score: 218; 37.6% identity (68.4% similar) in 117 aa overlap (13-128:293-402)
10 20 30 40
pF1KB6 MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMS
: . : : ....:: :::: ..
XP_016 LNKTDNGTYRCEASNIVGKAHSDYMLYVYDPPTTIPPPTTTTTTTTTTTTTI------LT
270 280 290 300 310
50 60 70 80 90 100
pF1KB6 GWPDGRM-ETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEF
:.: : .. .: .::.::.:.:..... ::... ::. :::::: :.::::..
XP_016 IITDSRAGEEGSIRAVDHAVIGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADD
320 330 340 350 360 370
110 120
pF1KB6 AESADAALQGDPALQDAGDSSRKEYFI
: .::.:. . . :. .. .:::::
XP_016 AADADTAIINAEGGQNNSEE-KKEYFI
380 390 400
>>NP_055148 (OMIM: 605686) cell adhesion molecule 1 isof (442 aa)
initn: 223 init1: 168 opt: 218 Z-score: 256.6 bits: 54.8 E(85289): 1.5e-07
Smith-Waterman score: 218; 37.6% identity (68.4% similar) in 117 aa overlap (13-128:333-442)
10 20 30 40
pF1KB6 MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAEPDPGMS
: . : : ....:: :::: ..
NP_055 LNKTDNGTYRCEASNIVGKAHSDYMLYVYDPPTTIPPPTTTTTTTTTTTTTI------LT
310 320 330 340 350
50 60 70 80 90 100
pF1KB6 GWPDGRM-ETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTNEAKGTEF
:.: : .. .: .::.::.:.:..... ::... ::. :::::: :.::::..
NP_055 IITDSRAGEEGSIRAVDHAVIGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADD
360 370 380 390 400 410
110 120
pF1KB6 AESADAALQGDPALQDAGDSSRKEYFI
: .::.:. . . :. .. .:::::
NP_055 AADADTAIINAEGGQNNSEE-KKEYFI
420 430 440
>>NP_001243431 (OMIM: 609938) cell adhesion molecule 2 i (327 aa)
initn: 160 init1: 119 opt: 204 Z-score: 242.3 bits: 51.8 E(85289): 9.3e-07
Smith-Waterman score: 204; 36.3% identity (63.7% similar) in 124 aa overlap (7-128:209-327)
10 20 30
pF1KB6 MWSTRSPNSTAWPLSLEPDPGMASASTTMHTTTIAE
:: : : .. :. :...::. ::
NP_001 NKTDNGTYRCEATNTIGQSSAEYVLIVHDVPN-TLLPTTIIPSLTTATVTTTVAITTSPT
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB6 PDPGMSGW--PDGRMETSTPTIMDIVVIAGVIAAVAIVLVSLLFVMLRYMYRHKGTYHTN
. :. :.. . : : ..:.:..:.:..: . .:.. ::. :::::: ::
NP_001 TSATTSSIRDPNALAGQNGP---DHALIGGIVAVVVFVTLCSIFLLGRYLARHKGTYLTN
240 250 260 270 280 290
100 110 120
pF1KB6 EAKGTEFAESADAALQGDPALQDAGDSSRKEYFI
::::.: : .::.:. . . : .. .:::::
NP_001 EAKGAEDAPDADTAIINAEGSQVNAEE-KKEYFI
300 310 320
128 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:02:08 2016 done: Sat Nov 5 00:02:09 2016
Total Scan time: 4.370 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]