FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6786, 154 aa
  1>>>pF1KB6786 154 - 154 aa - 154 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7759+/-0.000892; mu= 10.4057+/- 0.054
 mean_var=74.3458+/-14.587, 0's: 0 Z-trim(106.2): 9  B-trim: 3 in 1/52
 Lambda= 0.148746
 statistics sampled from 8869 (8872) to 8869 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.273), width:  16
 Scan time:  1.510

The best scores are:                                      opt bits E(32554)
CCDS8853.1 PFDN5 gene_id:5204|Hs108|chr12          ( 154)  961 215.0 1.5e-56
CCDS8854.1 PFDN5 gene_id:5204|Hs108|chr12          ( 109)  548 126.3 5.2e-30


>>CCDS8853.1 PFDN5 gene_id:5204|Hs108|chr12               (154 aa)
 initn: 961 init1: 961 opt: 961  Z-score: 1128.9  bits: 215.0 E(32554): 1.5e-56
Smith-Waterman score: 961; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KB6 MAQSINITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MAQSINITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 ELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPA
               70        80        90       100       110       120

              130       140       150    
pF1KB6 LQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA
       ::::::::::::::::::::::::::::::::::
CCDS88 LQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA
              130       140       150    

>>CCDS8854.1 PFDN5 gene_id:5204|Hs108|chr12               (109 aa)
 initn: 677 init1: 542 opt: 548  Z-score: 652.2  bits: 126.3 E(32554): 5.2e-30
Smith-Waterman score: 591; 70.8% identity (70.8% similar) in 154 aa overlap (1-154:1-109)

               10        20        30        40        50        60
pF1KB6 MAQSINITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGK
       ::::::::::::::::::::::::                                    
CCDS88 MAQSINITELNLPQLEMLKNQLDQ------------------------------------
               10        20                                        

               70        80        90       100       110       120
pF1KB6 ELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPA
                :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 ---------MYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPA
                    30        40        50        60        70     

              130       140       150    
pF1KB6 LQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA
       ::::::::::::::::::::::::::::::::::
CCDS88 LQEKHAMKQAVMEMMSQKIQQLTALGAAQATAKA
          80        90       100         




154 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:00:39 2016 done: Sat Nov  5 14:00:39 2016
 Total Scan time:  1.510 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]