FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6785, 125 aa
  1>>>pF1KB6785 125 - 125 aa - 125 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2899+/-0.000268; mu= 12.1288+/- 0.017
 mean_var=100.5000+/-18.927, 0's: 0 Z-trim(123.4): 50  B-trim: 166 in 1/51
 Lambda= 0.127936
 statistics sampled from 43002 (43075) to 43002 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.505), width:  16
 Scan time:  5.290

The best scores are:                                      opt bits E(85289)
NP_000906 (OMIM: 167050) oxytocin-neurophysin 1 pr ( 125)  945 183.2 9.3e-47
XP_011527540 (OMIM: 167050) PREDICTED: oxytocin-ne ( 125)  945 183.2 9.3e-47
XP_011527569 (OMIM: 125700,192340) PREDICTED: vaso ( 164)  698 137.8 5.9e-33
NP_000481 (OMIM: 125700,192340) vasopressin-neurop ( 164)  698 137.8 5.9e-33


>>NP_000906 (OMIM: 167050) oxytocin-neurophysin 1 prepro  (125 aa)
 initn: 945 init1: 945 opt: 945  Z-score: 960.4  bits: 183.2 E(85289): 9.3e-47
Smith-Waterman score: 945; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KB6 MAGPSLACCLLGLLALTSACYIQNCPLGGKRAAPDLDVRKCLPCGPGGKGRCFGPNICCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAGPSLACCLLGLLALTSACYIQNCPLGGKRAAPDLDVRKCLPCGPGGKGRCFGPNICCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAVLGLCCSPDGCHADPACDAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAVLGLCCSPDGCHADPACDAEA
               70        80        90       100       110       120

            
pF1KB6 TFSQR
       :::::
NP_000 TFSQR
            

>>XP_011527540 (OMIM: 167050) PREDICTED: oxytocin-neurop  (125 aa)
 initn: 945 init1: 945 opt: 945  Z-score: 960.4  bits: 183.2 E(85289): 9.3e-47
Smith-Waterman score: 945; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KB6 MAGPSLACCLLGLLALTSACYIQNCPLGGKRAAPDLDVRKCLPCGPGGKGRCFGPNICCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAGPSLACCLLGLLALTSACYIQNCPLGGKRAAPDLDVRKCLPCGPGGKGRCFGPNICCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAVLGLCCSPDGCHADPACDAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAVLGLCCSPDGCHADPACDAEA
               70        80        90       100       110       120

            
pF1KB6 TFSQR
       :::::
XP_011 TFSQR
            

>>XP_011527569 (OMIM: 125700,192340) PREDICTED: vasopres  (164 aa)
 initn: 758 init1: 679 opt: 698  Z-score: 712.6  bits: 137.8 E(85289): 5.9e-33
Smith-Waterman score: 698; 75.0% identity (89.7% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KB6 MAGPSLACCLLGLLALTSACYIQNCPLGGKRAAPDLDVRKCLPCGPGGKGRCFGPNICCA
       :    :  :.:::::..::::.:::: :::::  ::..:.:::::::::::::::.::::
XP_011 MPDTMLPACFLGLLAFSSACYFQNCPRGGKRAMSDLELRQCLPCGPGGKGRCFGPSICCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAVLGLCCSPDGCHADPACDAEA
       .::::::::::::::::::::::::::::::::::::::..:.::. ..: ..: :    
XP_011 DELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAAFGVCCNDESCVTEPECREGF
               70        80        90       100       110       120

                                                   
pF1KB6 TFSQR                                       
                                                   
XP_011 HRRARASDRSNATQLDGPAGALLLRLVQLAGAPEPFEPAQPDAY
              130       140       150       160    

>>NP_000481 (OMIM: 125700,192340) vasopressin-neurophysi  (164 aa)
 initn: 758 init1: 679 opt: 698  Z-score: 712.6  bits: 137.8 E(85289): 5.9e-33
Smith-Waterman score: 698; 75.0% identity (89.7% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KB6 MAGPSLACCLLGLLALTSACYIQNCPLGGKRAAPDLDVRKCLPCGPGGKGRCFGPNICCA
       :    :  :.:::::..::::.:::: :::::  ::..:.:::::::::::::::.::::
NP_000 MPDTMLPACFLGLLAFSSACYFQNCPRGGKRAMSDLELRQCLPCGPGGKGRCFGPSICCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAVLGLCCSPDGCHADPACDAEA
       .::::::::::::::::::::::::::::::::::::::..:.::. ..: ..: :    
NP_000 DELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAAFGVCCNDESCVTEPECREGF
               70        80        90       100       110       120

                                                   
pF1KB6 TFSQR                                       
                                                   
NP_000 HRRARASDRSNATQLDGPAGALLLRLVQLAGAPEPFEPAQPDAY
              130       140       150       160    




125 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:00:28 2016 done: Sat Nov  5 00:00:29 2016
 Total Scan time:  5.290 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]