FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6785, 125 aa
  1>>>pF1KB6785 125 - 125 aa - 125 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6676+/-0.00059; mu= 15.9314+/- 0.036
 mean_var=101.3512+/-18.860, 0's: 0 Z-trim(116.7): 37  B-trim: 12 in 1/52
 Lambda= 0.127397
 statistics sampled from 17358 (17395) to 17358 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.855), E-opt: 0.2 (0.534), width:  16
 Scan time:  1.610

The best scores are:                                      opt bits E(32554)
CCDS13044.1 OXT gene_id:5020|Hs108|chr20           ( 125)  945 182.3 6.8e-47
CCDS13045.1 AVP gene_id:551|Hs108|chr20            ( 164)  698 137.0 3.7e-33


>>CCDS13044.1 OXT gene_id:5020|Hs108|chr20                (125 aa)
 initn: 945 init1: 945 opt: 945  Z-score: 955.4  bits: 182.3 E(32554): 6.8e-47
Smith-Waterman score: 945; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KB6 MAGPSLACCLLGLLALTSACYIQNCPLGGKRAAPDLDVRKCLPCGPGGKGRCFGPNICCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAGPSLACCLLGLLALTSACYIQNCPLGGKRAAPDLDVRKCLPCGPGGKGRCFGPNICCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAVLGLCCSPDGCHADPACDAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAVLGLCCSPDGCHADPACDAEA
               70        80        90       100       110       120

            
pF1KB6 TFSQR
       :::::
CCDS13 TFSQR
            

>>CCDS13045.1 AVP gene_id:551|Hs108|chr20                 (164 aa)
 initn: 758 init1: 679 opt: 698  Z-score: 708.7  bits: 137.0 E(32554): 3.7e-33
Smith-Waterman score: 698; 75.0% identity (89.7% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KB6 MAGPSLACCLLGLLALTSACYIQNCPLGGKRAAPDLDVRKCLPCGPGGKGRCFGPNICCA
       :    :  :.:::::..::::.:::: :::::  ::..:.:::::::::::::::.::::
CCDS13 MPDTMLPACFLGLLAFSSACYFQNCPRGGKRAMSDLELRQCLPCGPGGKGRCFGPSICCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAVLGLCCSPDGCHADPACDAEA
       .::::::::::::::::::::::::::::::::::::::..:.::. ..: ..: :    
CCDS13 DELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAAFGVCCNDESCVTEPECREGF
               70        80        90       100       110       120

                                                   
pF1KB6 TFSQR                                       
                                                   
CCDS13 HRRARASDRSNATQLDGPAGALLLRLVQLAGAPEPFEPAQPDAY
              130       140       150       160    




125 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:00:27 2016 done: Sat Nov  5 00:00:28 2016
 Total Scan time:  1.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]