FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6783, 121 aa
  1>>>pF1KB6783 121 - 121 aa - 121 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2305+/-0.000732; mu= 9.8122+/- 0.044
 mean_var=49.3056+/- 9.771, 0's: 0 Z-trim(106.4): 12  B-trim: 0 in 0/48
 Lambda= 0.182653
 statistics sampled from 8941 (8943) to 8941 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.275), width:  16
 Scan time:  1.380

The best scores are:                                      opt bits E(32554)
CCDS5356.1 RPA3 gene_id:6119|Hs108|chr7            ( 121)  813 221.6 9.5e-59


>>CCDS5356.1 RPA3 gene_id:6119|Hs108|chr7                 (121 aa)
 initn: 813 init1: 813 opt: 813  Z-score: 1168.2  bits: 221.6 E(32554): 9.5e-59
Smith-Waterman score: 813; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:1-121)

               10        20        30        40        50        60
pF1KB6 MVDMMDLPRSRINAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MVDMMDLPRSRINAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EEISGIVEVVGRVTAKATILCTSYVQFKEDSHPFDLGLYNEAVKIIHDFPQFYPLGIVQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EEISGIVEVVGRVTAKATILCTSYVQFKEDSHPFDLGLYNEAVKIIHDFPQFYPLGIVQH
               70        80        90       100       110       120

        
pF1KB6 D
       :
CCDS53 D
        




121 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:59:56 2016 done: Fri Nov  4 23:59:56 2016
 Total Scan time:  1.380 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]