FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6775, 118 aa
  1>>>pF1KB6775 118 - 118 aa - 118 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1395+/-0.000618; mu= 11.4377+/- 0.037
 mean_var=57.7574+/-11.306, 0's: 0 Z-trim(111.0): 11  B-trim: 0 in 0/50
 Lambda= 0.168760
 statistics sampled from 12012 (12020) to 12012 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.369), width:  16
 Scan time:  1.220

The best scores are:                                      opt bits E(32554)
CCDS33053.1 SNRPD2 gene_id:6633|Hs108|chr19        ( 118)  769 194.5 1.3e-50
CCDS54281.1 SNRPD2 gene_id:6633|Hs108|chr19        ( 108)  707 179.4 4.1e-46


>>CCDS33053.1 SNRPD2 gene_id:6633|Hs108|chr19             (118 aa)
 initn: 769 init1: 769 opt: 769  Z-score: 1022.3  bits: 194.5 E(32554): 1.3e-50
Smith-Waterman score: 769; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KB6 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KB6 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK
               70        80        90       100       110        

>>CCDS54281.1 SNRPD2 gene_id:6633|Hs108|chr19             (108 aa)
 initn: 707 init1: 707 opt: 707  Z-score: 941.3  bits: 179.4 E(32554): 4.1e-46
Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 108 aa overlap (11-118:1-108)

               10        20        30        40        50        60
pF1KB6 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54           MTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD
                         10        20        30        40        50

               70        80        90       100       110        
pF1KB6 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK
               60        70        80        90       100        




118 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:57:43 2016 done: Fri Nov  4 23:57:43 2016
 Total Scan time:  1.220 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]