Result of FASTA (omim) for
pF1KB6772
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6772, 151 aa
1>>>pF1KB6772 151 - 151 aa - 151 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9497+/-0.000353; mu= 14.1505+/- 0.022
mean_var=76.8560+/-15.586, 0's: 0 Z-trim(113.8): 98 B-trim: 10 in 1/56
Lambda= 0.146297
statistics sampled from 23128 (23256) to 23128 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.273), width: 16
Scan time: 4.950
The best scores are: opt bits E(85289)
NP_066299 (OMIM: 609931) myosin light polypeptide ( 151) 1003 220.7 7.3e-58
NP_524147 (OMIM: 609931) myosin light polypeptide ( 151) 974 214.5 5.1e-56
NP_001186558 (OMIM: 609930) myosin light chain 6B ( 208) 829 184.1 1.1e-46
NP_002466 (OMIM: 609930) myosin light chain 6B [Ho ( 208) 829 184.1 1.1e-46
NP_001002841 (OMIM: 160770) myosin light chain 4 [ ( 197) 790 175.8 3e-44
XP_005257448 (OMIM: 160770) PREDICTED: myosin ligh ( 197) 790 175.8 3e-44
NP_002467 (OMIM: 160770) myosin light chain 4 [Hom ( 197) 790 175.8 3e-44
NP_524146 (OMIM: 160780) myosin light chain 1/3, s ( 150) 763 170.0 1.3e-42
XP_016880172 (OMIM: 160770) PREDICTED: myosin ligh ( 228) 757 168.9 4.2e-42
XP_011523141 (OMIM: 160770) PREDICTED: myosin ligh ( 228) 757 168.9 4.2e-42
XP_016880173 (OMIM: 160770) PREDICTED: myosin ligh ( 228) 757 168.9 4.2e-42
NP_524144 (OMIM: 160780) myosin light chain 1/3, s ( 194) 754 168.2 5.8e-42
NP_000249 (OMIM: 160790,608751) myosin light chain ( 195) 752 167.8 7.8e-42
NP_005176 (OMIM: 114184) calmodulin-like protein 3 ( 149) 430 99.7 1.9e-21
NP_001316851 (OMIM: 114183) calmodulin isoform 1 [ ( 149) 428 99.3 2.5e-21
NP_008819 (OMIM: 114180,614916,616247) calmodulin ( 149) 428 99.3 2.5e-21
NP_005175 (OMIM: 114183) calmodulin isoform 1 [Hom ( 149) 428 99.3 2.5e-21
NP_001734 (OMIM: 114182,616249) calmodulin isoform ( 149) 428 99.3 2.5e-21
XP_006720321 (OMIM: 114180,614916,616247) PREDICTE ( 150) 426 98.9 3.3e-21
NP_001292553 (OMIM: 114182,616249) calmodulin isof ( 197) 426 99.0 4.1e-21
NP_001316850 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 302 72.6 2.1e-13
NP_001316853 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 302 72.6 2.1e-13
NP_001316852 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 302 72.6 2.1e-13
NP_001292554 (OMIM: 114182,616249) calmodulin isof ( 113) 302 72.6 2.1e-13
NP_001316854 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 302 72.6 2.1e-13
NP_001316855 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 302 72.6 2.1e-13
NP_001292555 (OMIM: 114182,616249) calmodulin isof ( 113) 302 72.6 2.1e-13
NP_003270 (OMIM: 191039) troponin C, skeletal musc ( 160) 300 72.3 3.5e-13
XP_011527333 (OMIM: 191039) PREDICTED: troponin C, ( 145) 290 70.1 1.4e-12
NP_003271 (OMIM: 191040,611879,613243) troponin C, ( 161) 276 67.2 1.2e-11
NP_004057 (OMIM: 603187) centrin-1 [Homo sapiens] ( 172) 260 63.9 1.3e-10
NP_059118 (OMIM: 605183) calmodulin-like protein 5 ( 146) 245 60.7 1e-09
NP_004335 (OMIM: 300006) centrin-2 [Homo sapiens] ( 172) 245 60.7 1.2e-09
NP_004356 (OMIM: 602907) centrin-3 isoform 2 [Homo ( 167) 243 60.3 1.5e-09
NP_057450 (OMIM: 607314,614899) calcium-binding pr ( 220) 238 59.3 3.9e-09
NP_001305425 (OMIM: 607314,614899) calcium-binding ( 226) 238 59.3 4e-09
NP_001317242 (OMIM: 610171) calmodulin-like protei ( 164) 235 58.6 4.9e-09
NP_619650 (OMIM: 610171) calmodulin-like protein 6 ( 181) 235 58.6 5.2e-09
XP_005244786 (OMIM: 610171) PREDICTED: calmodulin- ( 203) 235 58.7 5.7e-09
NP_001138417 (OMIM: 609211) myosin regulatory ligh ( 172) 225 56.5 2.2e-08
NP_001138416 (OMIM: 609211) myosin regulatory ligh ( 172) 225 56.5 2.2e-08
NP_291024 (OMIM: 609211) myosin regulatory light c ( 172) 225 56.5 2.2e-08
NP_062829 (OMIM: 607315) calcium-binding protein 5 ( 173) 220 55.4 4.5e-08
NP_006088 (OMIM: 609905) myosin regulatory light p ( 172) 218 55.0 6.1e-08
XP_016882481 (OMIM: 607315) PREDICTED: calcium-bin ( 284) 220 55.6 6.5e-08
NP_004267 (OMIM: 605563) calcium-binding protein 1 ( 167) 216 54.6 8e-08
NP_001284694 (OMIM: 602907) centrin-3 isoform 1 [H ( 191) 216 54.6 8.8e-08
NP_112482 (OMIM: 605563) calcium-binding protein 1 ( 227) 216 54.7 9.9e-08
NP_000423 (OMIM: 160781,608758) myosin regulatory ( 166) 214 54.2 1.1e-07
NP_001028849 (OMIM: 605563) calcium-binding protei ( 370) 216 54.9 1.4e-07
>>NP_066299 (OMIM: 609931) myosin light polypeptide 6 is (151 aa)
initn: 1003 init1: 1003 opt: 1003 Z-score: 1159.8 bits: 220.7 E(85289): 7.3e-58
Smith-Waterman score: 1003; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151)
10 20 30 40 50 60
pF1KB6 MCDFTEDQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MCDFTEDQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NVKVLDFEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 NVKVLDFEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKM
70 80 90 100 110 120
130 140 150
pF1KB6 TEEEVEMLVAGHEDSNGCINYEAFVRHILSG
:::::::::::::::::::::::::::::::
NP_066 TEEEVEMLVAGHEDSNGCINYEAFVRHILSG
130 140 150
>>NP_524147 (OMIM: 609931) myosin light polypeptide 6 is (151 aa)
initn: 1052 init1: 974 opt: 974 Z-score: 1126.7 bits: 214.5 E(85289): 5.1e-56
Smith-Waterman score: 974; 96.7% identity (98.7% similar) in 151 aa overlap (1-151:1-151)
10 20 30 40 50 60
pF1KB6 MCDFTEDQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_524 MCDFTEDQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NVKVLDFEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_524 NVKVLDFEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKM
70 80 90 100 110 120
130 140 150
pF1KB6 TEEEVEMLVAGHEDSNGCINYEAFVRHILSG
:::::::::::::::::::::: .:: .:.:
NP_524 TEEEVEMLVAGHEDSNGCINYEELVRMVLNG
130 140 150
>>NP_001186558 (OMIM: 609930) myosin light chain 6B [Hom (208 aa)
initn: 829 init1: 829 opt: 829 Z-score: 959.5 bits: 184.1 E(85289): 1.1e-46
Smith-Waterman score: 829; 81.8% identity (94.6% similar) in 148 aa overlap (3-150:60-207)
10 20 30
pF1KB6 MCDFTEDQTAEFKEAFQLFDRTGDGKILYSQC
.:..:: ::::::.::::.::::::::::
NP_001 PPAKTKAEPAVPQAPQKTQEPPVDLSKVVIEFNKDQLEEFKEAFELFDRVGDGKILYSQC
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB6 GDVMRALGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHFLPMLQTVAKNKDQGTYEDYVEG
:::::::::::::::::::::::::::.. . .::: ::::::.::::. :::::::.::
NP_001 GDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEG
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB6 LRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHEDSNGCINYEAFVRHILSG
.::::::::: :::::.::::.:::::::::::: ..:::::::::::::::..::::
NP_001 FRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNGCINYEAFLKHILSV
150 160 170 180 190 200
>>NP_002466 (OMIM: 609930) myosin light chain 6B [Homo s (208 aa)
initn: 829 init1: 829 opt: 829 Z-score: 959.5 bits: 184.1 E(85289): 1.1e-46
Smith-Waterman score: 829; 81.8% identity (94.6% similar) in 148 aa overlap (3-150:60-207)
10 20 30
pF1KB6 MCDFTEDQTAEFKEAFQLFDRTGDGKILYSQC
.:..:: ::::::.::::.::::::::::
NP_002 PPAKTKAEPAVPQAPQKTQEPPVDLSKVVIEFNKDQLEEFKEAFELFDRVGDGKILYSQC
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB6 GDVMRALGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHFLPMLQTVAKNKDQGTYEDYVEG
:::::::::::::::::::::::::::.. . .::: ::::::.::::. :::::::.::
NP_002 GDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEG
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB6 LRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHEDSNGCINYEAFVRHILSG
.::::::::: :::::.::::.:::::::::::: ..:::::::::::::::..::::
NP_002 FRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNGCINYEAFLKHILSV
150 160 170 180 190 200
>>NP_001002841 (OMIM: 160770) myosin light chain 4 [Homo (197 aa)
initn: 704 init1: 704 opt: 790 Z-score: 915.3 bits: 175.8 E(85289): 3e-44
Smith-Waterman score: 790; 77.5% identity (92.7% similar) in 151 aa overlap (3-151:47-197)
10 20 30
pF1KB6 MCDFTEDQTAEFKEAFQLFDRT--GDGKILYS
::: :: ::::::.::::: :. :: :.
NP_001 PAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAFSLFDRTPTGEMKITYG
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB6 QCGDVMRALGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHFLPMLQTVAKNKDQGTYEDYV
:::::.:::::::::::::.:::.:: .:::::.:::: :::.:: ...::.::::::.:
NP_001 QCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFV
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB6 EGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHEDSNGCINYEAFVRHILS
:::::::::.::::::::.::::.:::::::: :::.:.::.::.::::::::::.::.:
NP_001 EGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIMS
140 150 160 170 180 190
pF1KB6 G
:
NP_001 G
>>XP_005257448 (OMIM: 160770) PREDICTED: myosin light ch (197 aa)
initn: 704 init1: 704 opt: 790 Z-score: 915.3 bits: 175.8 E(85289): 3e-44
Smith-Waterman score: 790; 77.5% identity (92.7% similar) in 151 aa overlap (3-151:47-197)
10 20 30
pF1KB6 MCDFTEDQTAEFKEAFQLFDRT--GDGKILYS
::: :: ::::::.::::: :. :: :.
XP_005 PAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAFSLFDRTPTGEMKITYG
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB6 QCGDVMRALGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHFLPMLQTVAKNKDQGTYEDYV
:::::.:::::::::::::.:::.:: .:::::.:::: :::.:: ...::.::::::.:
XP_005 QCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFV
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB6 EGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHEDSNGCINYEAFVRHILS
:::::::::.::::::::.::::.:::::::: :::.:.::.::.::::::::::.::.:
XP_005 EGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIMS
140 150 160 170 180 190
pF1KB6 G
:
XP_005 G
>>NP_002467 (OMIM: 160770) myosin light chain 4 [Homo sa (197 aa)
initn: 704 init1: 704 opt: 790 Z-score: 915.3 bits: 175.8 E(85289): 3e-44
Smith-Waterman score: 790; 77.5% identity (92.7% similar) in 151 aa overlap (3-151:47-197)
10 20 30
pF1KB6 MCDFTEDQTAEFKEAFQLFDRT--GDGKILYS
::: :: ::::::.::::: :. :: :.
NP_002 PAPAPAPAPAPAPAPEAPKEPAFDPKSVKIDFTADQIEEFKEAFSLFDRTPTGEMKITYG
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB6 QCGDVMRALGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHFLPMLQTVAKNKDQGTYEDYV
:::::.:::::::::::::.:::.:: .:::::.:::: :::.:: ...::.::::::.:
NP_002 QCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFV
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB6 EGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHEDSNGCINYEAFVRHILS
:::::::::.::::::::.::::.:::::::: :::.:.::.::.::::::::::.::.:
NP_002 EGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIMS
140 150 160 170 180 190
pF1KB6 G
:
NP_002 G
>>NP_524146 (OMIM: 160780) myosin light chain 1/3, skele (150 aa)
initn: 836 init1: 754 opt: 763 Z-score: 886.0 bits: 170.0 E(85289): 1.3e-42
Smith-Waterman score: 763; 76.2% identity (92.5% similar) in 147 aa overlap (4-150:3-149)
10 20 30 40 50 60
pF1KB6 MCDFTEDQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEM
:. :: ::::::: :::::::.:: :: :::.:::: ::::::: ::::::...:.
NP_524 MSFSADQIAEFKEAFLLFDRTGDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEEL
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 NVKVLDFEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKM
:.: ..::.::::.:....::::.::::.:::::::::::::::::::.::::.::::::
NP_524 NAKKIEFEQFLPMMQAISNNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKM
60 70 80 90 100 110
130 140 150
pF1KB6 TEEEVEMLVAGHEDSNGCINYEAFVRHILSG
::::: :.::.:::::::::::::.::.:
NP_524 KEEEVEALMAGQEDSNGCINYEAFVKHIMSI
120 130 140 150
>>XP_016880172 (OMIM: 160770) PREDICTED: myosin light ch (228 aa)
initn: 725 init1: 704 opt: 757 Z-score: 876.8 bits: 168.9 E(85289): 4.2e-42
Smith-Waterman score: 757; 78.3% identity (94.4% similar) in 143 aa overlap (11-151:86-228)
10 20 30
pF1KB6 MCDFTEDQTAEFKEAFQLFDRT--GDGKILYSQCGDVMRA
::::::.::::: :. :: :.:::::.::
XP_016 EYGQPHLSVSIALSWRRRRRRKKRRSSCPHEFKEAFSLFDRTPTGEMKITYGQCGDVLRA
60 70 80 90 100 110
40 50 60 70 80 90
pF1KB6 LGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDK
:::::::::::.:::.:: .:::::.:::: :::.:: ...::.::::::.:::::::::
XP_016 LGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDK
120 130 140 150 160 170
100 110 120 130 140 150
pF1KB6 EGNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHEDSNGCINYEAFVRHILSG
:.::::::::.::::.:::::::: :::.:.::.::.::::::::::.::.::
XP_016 ESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIMSG
180 190 200 210 220
>>XP_011523141 (OMIM: 160770) PREDICTED: myosin light ch (228 aa)
initn: 725 init1: 704 opt: 757 Z-score: 876.8 bits: 168.9 E(85289): 4.2e-42
Smith-Waterman score: 757; 78.3% identity (94.4% similar) in 143 aa overlap (11-151:86-228)
10 20 30
pF1KB6 MCDFTEDQTAEFKEAFQLFDRT--GDGKILYSQCGDVMRA
::::::.::::: :. :: :.:::::.::
XP_011 EYGQPHLSVSIALSWRRRRRRKKRRSSCPHEFKEAFSLFDRTPTGEMKITYGQCGDVLRA
60 70 80 90 100 110
40 50 60 70 80 90
pF1KB6 LGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDK
:::::::::::.:::.:: .:::::.:::: :::.:: ...::.::::::.:::::::::
XP_011 LGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDK
120 130 140 150 160 170
100 110 120 130 140 150
pF1KB6 EGNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHEDSNGCINYEAFVRHILSG
:.::::::::.::::.:::::::: :::.:.::.::.::::::::::.::.::
XP_011 ESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIMSG
180 190 200 210 220
151 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:57:49 2016 done: Sat Nov 5 13:57:49 2016
Total Scan time: 4.950 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]