FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6769, 116 aa
  1>>>pF1KB6769 116 - 116 aa - 116 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9681+/-0.000494; mu= 13.1584+/- 0.030
 mean_var=70.5161+/-14.059, 0's: 0 Z-trim(115.6): 11  B-trim: 0 in 0/52
 Lambda= 0.152732
 statistics sampled from 16172 (16183) to 16172 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.85), E-opt: 0.2 (0.497), width:  16
 Scan time:  1.400

The best scores are:                                      opt bits E(32554)
CCDS46750.1 GHRL gene_id:51738|Hs108|chr3          ( 116)  790 181.5 9.9e-47
CCDS33700.1 GHRL gene_id:51738|Hs108|chr3          ( 117)  778 178.9 6.2e-46
CCDS46749.1 GHRL gene_id:51738|Hs108|chr3          ( 104)  567 132.4 5.7e-32
CCDS46748.1 GHRL gene_id:51738|Hs108|chr3          ( 105)  555 129.7 3.6e-31
CCDS46747.1 GHRL gene_id:51738|Hs108|chr3          (  66)  290 71.2 9.5e-14


>>CCDS46750.1 GHRL gene_id:51738|Hs108|chr3               (116 aa)
 initn: 790 init1: 790 opt: 790  Z-score: 952.4  bits: 181.5 E(32554): 9.9e-47
Smith-Waterman score: 790; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KB6 MPSPGTVCSLLLLGMLWLDLAMAGSSFLSPEHQRVQRKESKKPPAKLQPRALAGWLRPED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MPSPGTVCSLLLLGMLWLDLAMAGSSFLSPEHQRVQRKESKKPPAKLQPRALAGWLRPED
               10        20        30        40        50        60

               70        80        90       100       110      
pF1KB6 GGQAEGAEDELEVRFNAPFDVGIKLSGVQYQQHSQALGKFLQDILWEEAKEAPADK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GGQAEGAEDELEVRFNAPFDVGIKLSGVQYQQHSQALGKFLQDILWEEAKEAPADK
               70        80        90       100       110      

>>CCDS33700.1 GHRL gene_id:51738|Hs108|chr3               (117 aa)
 initn: 551 init1: 551 opt: 778  Z-score: 938.1  bits: 178.9 E(32554): 6.2e-46
Smith-Waterman score: 778; 99.1% identity (99.1% similar) in 117 aa overlap (1-116:1-117)

               10        20        30         40        50         
pF1KB6 MPSPGTVCSLLLLGMLWLDLAMAGSSFLSPEHQRVQ-RKESKKPPAKLQPRALAGWLRPE
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS33 MPSPGTVCSLLLLGMLWLDLAMAGSSFLSPEHQRVQQRKESKKPPAKLQPRALAGWLRPE
               10        20        30        40        50        60

      60        70        80        90       100       110      
pF1KB6 DGGQAEGAEDELEVRFNAPFDVGIKLSGVQYQQHSQALGKFLQDILWEEAKEAPADK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DGGQAEGAEDELEVRFNAPFDVGIKLSGVQYQQHSQALGKFLQDILWEEAKEAPADK
               70        80        90       100       110       

>>CCDS46749.1 GHRL gene_id:51738|Hs108|chr3               (104 aa)
 initn: 567 init1: 567 opt: 567  Z-score: 687.5  bits: 132.4 E(32554): 5.7e-32
Smith-Waterman score: 567; 97.7% identity (98.8% similar) in 86 aa overlap (31-116:19-104)

               10        20        30        40        50        60
pF1KB6 MPSPGTVCSLLLLGMLWLDLAMAGSSFLSPEHQRVQRKESKKPPAKLQPRALAGWLRPED
                                     : .:::::::::::::::::::::::::::
CCDS46             MFTCWWSYLRSTLAAVPGEASRVQRKESKKPPAKLQPRALAGWLRPED
                           10        20        30        40        

               70        80        90       100       110      
pF1KB6 GGQAEGAEDELEVRFNAPFDVGIKLSGVQYQQHSQALGKFLQDILWEEAKEAPADK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GGQAEGAEDELEVRFNAPFDVGIKLSGVQYQQHSQALGKFLQDILWEEAKEAPADK
       50        60        70        80        90       100    

>>CCDS46748.1 GHRL gene_id:51738|Hs108|chr3               (105 aa)
 initn: 551 init1: 551 opt: 555  Z-score: 673.2  bits: 129.7 E(32554): 3.6e-31
Smith-Waterman score: 555; 96.6% identity (97.7% similar) in 87 aa overlap (31-116:19-105)

               10        20        30         40        50         
pF1KB6 MPSPGTVCSLLLLGMLWLDLAMAGSSFLSPEHQRVQ-RKESKKPPAKLQPRALAGWLRPE
                                     : .::: :::::::::::::::::::::::
CCDS46             MFTCWWSYLRSTLAAVPGEASRVQQRKESKKPPAKLQPRALAGWLRPE
                           10        20        30        40        

      60        70        80        90       100       110      
pF1KB6 DGGQAEGAEDELEVRFNAPFDVGIKLSGVQYQQHSQALGKFLQDILWEEAKEAPADK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DGGQAEGAEDELEVRFNAPFDVGIKLSGVQYQQHSQALGKFLQDILWEEAKEAPADK
       50        60        70        80        90       100     

>>CCDS46747.1 GHRL gene_id:51738|Hs108|chr3               (66 aa)
 initn: 290 init1: 290 opt: 290  Z-score: 360.3  bits: 71.2 E(32554): 9.5e-14
Smith-Waterman score: 290; 97.7% identity (100.0% similar) in 44 aa overlap (73-116:23-66)

             50        60        70        80        90       100  
pF1KB6 PPAKLQPRALAGWLRPEDGGQAEGAEDELEVRFNAPFDVGIKLSGVQYQQHSQALGKFLQ
                                     :.::::::::::::::::::::::::::::
CCDS46         MFTCWWSYLRSTLAAVPGEASRVQFNAPFDVGIKLSGVQYQQHSQALGKFLQ
                       10        20        30        40        50  

            110      
pF1KB6 DILWEEAKEAPADK
       ::::::::::::::
CCDS46 DILWEEAKEAPADK
             60      




116 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:54:32 2016 done: Fri Nov  4 23:54:32 2016
 Total Scan time:  1.400 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]