Result of FASTA (omim) for
pF1KB6765
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6765, 114 aa
1>>>pF1KB6765 114 - 114 aa - 114 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6539+/-0.00024; mu= 14.5336+/- 0.015
mean_var=65.0282+/-12.588, 0's: 0 Z-trim(123.4): 38 B-trim: 0 in 0/56
Lambda= 0.159046
statistics sampled from 43053 (43099) to 43053 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.841), E-opt: 0.2 (0.505), width: 16
Scan time: 4.560
The best scores are: opt bits E(85289)
NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 747 178.5 2.1e-45
NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 p ( 114) 599 144.5 3.4e-35
NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107) 287 72.9 1.2e-13
NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107) 269 68.8 2e-12
NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107) 263 67.4 5.3e-12
NP_002695 (OMIM: 121010) platelet basic protein pr ( 128) 251 64.7 4.1e-11
NP_002610 (OMIM: 173460) platelet factor 4 precurs ( 101) 245 63.3 8.9e-11
XP_005265753 (OMIM: 173460) PREDICTED: platelet fa ( 110) 236 61.2 4e-10
NP_002611 (OMIM: 173461) platelet factor 4 variant ( 104) 221 57.8 4.1e-09
NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 196 52.0 2.1e-07
NP_001556 (OMIM: 147310) C-X-C motif chemokine 10 ( 98) 186 49.7 1e-06
NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 p ( 125) 173 46.8 9.8e-06
NP_006410 (OMIM: 605149) C-X-C motif chemokine 13 ( 109) 166 45.2 2.7e-05
XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif ( 109) 166 45.2 2.7e-05
NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119) 142 39.7 0.0013
NP_954637 (OMIM: 600835,609423) stromal cell-deriv ( 89) 131 37.1 0.0061
NP_000600 (OMIM: 600835,609423) stromal cell-deriv ( 93) 131 37.1 0.0063
NP_001171605 (OMIM: 600835,609423) stromal cell-de ( 140) 132 37.5 0.0072
>>NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 precu (114 aa)
initn: 747 init1: 747 opt: 747 Z-score: 936.3 bits: 178.5 E(85289): 2.1e-45
Smith-Waterman score: 747; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KB6 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
70 80 90 100 110
>>NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 precu (114 aa)
initn: 645 init1: 599 opt: 599 Z-score: 752.8 bits: 144.5 E(85289): 3.4e-35
Smith-Waterman score: 599; 79.8% identity (93.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KB6 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
::: :::::::::::.::::::.:::::: :::.:::::..::: ::::.::..: :.:
NP_002 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
: :..:::: :::::::::::::::::..::::::::::::::::::.:::.:
NP_002 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
70 80 90 100 110
>>NP_001502 (OMIM: 155730) growth-regulated alpha protei (107 aa)
initn: 296 init1: 249 opt: 287 Z-score: 366.2 bits: 72.9 E(85289): 1.2e-13
Smith-Waterman score: 287; 43.1% identity (75.2% similar) in 109 aa overlap (6-114:2-107)
10 20 30 40 50 60
pF1KB6 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
.::: .::. .:::::: . .:: ..: ::::: ::.. ..:
NP_001 MARAALSAAPSNPRLLRVALLLLLLVAAGRRAAG--ASVATELRCQCLQTLQGIHP
10 20 30 40 50
70 80 90 100 110
pF1KB6 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
:.: ...: ::.:...::.:.::::...::.: .:..::.:.:.:.: .:.:
NP_001 KNIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNS-DKSN
60 70 80 90 100
>>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu (107 aa)
initn: 288 init1: 245 opt: 269 Z-score: 343.9 bits: 68.8 E(85289): 2e-12
Smith-Waterman score: 269; 42.9% identity (76.5% similar) in 98 aa overlap (14-111:10-105)
10 20 30 40 50 60
pF1KB6 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
::. .:::::: . .:: ..:.::::: ::.. ..
NP_002 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAG--ASVVTELRCQCLQTLQGIHL
10 20 30 40 50
70 80 90 100 110
pF1KB6 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
:.: ...: ::.:...::.:.:::::..::.: .:...:.:.:::..:.
NP_002 KNIQSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN
60 70 80 90 100
>>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu (107 aa)
initn: 287 init1: 232 opt: 263 Z-score: 336.5 bits: 67.4 E(85289): 5.3e-12
Smith-Waterman score: 263; 40.4% identity (72.5% similar) in 109 aa overlap (6-114:2-107)
10 20 30 40 50 60
pF1KB6 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
.::. .::. .:::::: . .:: . . ::::: ::.. ..
NP_002 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAG--APLATELRCQCLQTLQGIHL
10 20 30 40 50
70 80 90 100 110
pF1KB6 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
:.: ...: ::.:...::.:.::::...::.: .:..::.:.:.: .: :.:
NP_002 KNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNG-KSN
60 70 80 90 100
>>NP_002695 (OMIM: 121010) platelet basic protein prepro (128 aa)
initn: 297 init1: 248 opt: 251 Z-score: 320.6 bits: 64.7 E(85289): 4.1e-11
Smith-Waterman score: 256; 40.5% identity (65.3% similar) in 121 aa overlap (2-107:7-121)
10 20 30 40
pF1KB6 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASA--GPV-------------
. :: .:: : .: .:: : :::: :::. : .
NP_002 MSLRLDTTPSCNSAR---PLHALQVLLLLSLLLTA---LASSTKGQTKRNLAKGKEESLD
10 20 30 40 50
50 60 70 80 90 100
pF1KB6 SAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLK
: . .:::: :...: ..::.: .:.:. : .:..:::.:.::.:...::::.:: .:
NP_002 SDLYAELRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIK
60 70 80 90 100 110
110
pF1KB6 KVIQKILDSGNKKN
:..:: :
NP_002 KIVQKKLAGDESAD
120
>>NP_002610 (OMIM: 173460) platelet factor 4 precursor [ (101 aa)
initn: 227 init1: 166 opt: 245 Z-score: 314.5 bits: 63.3 E(85289): 8.9e-11
Smith-Waterman score: 245; 40.4% identity (72.7% similar) in 99 aa overlap (15-109:4-101)
10 20 30 40 50
pF1KB6 MSLPSSRAARVPGPSGSLCA----LLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTL
....:: :: : ::: : .: :. . .:.: :...:
NP_002 MSSAAGFCASRPGLLFLGLLLLPL-VVAFASAEAEEDGDLQCLCVKTTS
10 20 30 40
60 70 80 90 100 110
pF1KB6 RVNPKTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
.: :. : .:.:. :::.: ....:.::::...::: .::. ::.:.:.:.:
NP_002 QVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES
50 60 70 80 90 100
>>XP_005265753 (OMIM: 173460) PREDICTED: platelet factor (110 aa)
initn: 212 init1: 166 opt: 236 Z-score: 302.8 bits: 61.2 E(85289): 4e-10
Smith-Waterman score: 236; 35.8% identity (68.9% similar) in 106 aa overlap (4-109:10-110)
10 20 30 40 50
pF1KB6 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRV
:. : ::: . . . : : :. : . . . .. .:.: :...
XP_005 MITATLNGEPAECLATVPGAAPAPPTWLEQL--LSGGGVIYAEAEEDG---DLQCLCVKT
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 TLRVNPKTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
: .: :. : .:.:. :::.: ....:.::::...::: .::. ::.:.:.:.:
XP_005 TSQVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES
60 70 80 90 100 110
>>NP_002611 (OMIM: 173461) platelet factor 4 variant pre (104 aa)
initn: 199 init1: 141 opt: 221 Z-score: 284.6 bits: 57.8 E(85289): 4.1e-09
Smith-Waterman score: 221; 37.5% identity (66.3% similar) in 104 aa overlap (6-109:2-104)
10 20 30 40 50 60
pF1KB6 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
: ::: .. .: : ::: : .: : . .:.: :...: .: :
NP_002 MSSAARSRLTRATRQEMLFLALLLLPV-VVAFARAEAEEDGDLQCLCVKTTSQVRP
10 20 30 40 50
70 80 90 100 110
pF1KB6 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
. : .:.:. :::.: ....:.::::...::: .: . ::.:.. :.:
NP_002 RHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEHLES
60 70 80 90 100
>>NP_000575 (OMIM: 146930) interleukin-8 precursor [Homo (99 aa)
initn: 206 init1: 160 opt: 196 Z-score: 253.8 bits: 52.0 E(85289): 2.1e-07
Smith-Waterman score: 196; 37.1% identity (80.0% similar) in 70 aa overlap (39-107:26-93)
10 20 30 40 50 60
pF1KB6 ARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLR-VNPKTIGKLQ
: :: :::: :... . .:: : .:.
NP_000 MTSKLAVALLAAFLISAALCEGAVLPRSA--KELRCQCIKTYSKPFHPKFIKELR
10 20 30 40 50
70 80 90 100 110
pF1KB6 VFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
:. .::.:...:....:..:...::::. ....:..:.:
NP_000 VIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
60 70 80 90
114 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:52:57 2016 done: Fri Nov 4 23:52:58 2016
Total Scan time: 4.560 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]