Result of FASTA (ccds) for
pF1KB6765
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6765, 114 aa
1>>>pF1KB6765 114 - 114 aa - 114 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0138+/-0.000481; mu= 12.7148+/- 0.029
mean_var=67.7664+/-13.117, 0's: 0 Z-trim(116.5): 33 B-trim: 0 in 0/53
Lambda= 0.155800
statistics sampled from 17097 (17133) to 17097 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.852), E-opt: 0.2 (0.526), width: 16
Scan time: 1.450
The best scores are: opt bits E(32554)
CCDS3560.1 CXCL6 gene_id:6372|Hs108|chr4 ( 114) 747 175.1 8.1e-45
CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4 ( 114) 599 141.9 8.3e-35
CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4 ( 107) 287 71.7 1e-13
CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4 ( 107) 269 67.7 1.7e-12
CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4 ( 107) 263 66.3 4.3e-12
CCDS3563.1 PPBP gene_id:5473|Hs108|chr4 ( 128) 251 63.7 3.2e-11
CCDS3562.1 PF4 gene_id:5196|Hs108|chr4 ( 101) 245 62.3 6.8e-11
>>CCDS3560.1 CXCL6 gene_id:6372|Hs108|chr4 (114 aa)
initn: 747 init1: 747 opt: 747 Z-score: 918.1 bits: 175.1 E(32554): 8.1e-45
Smith-Waterman score: 747; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KB6 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
70 80 90 100 110
>>CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4 (114 aa)
initn: 645 init1: 599 opt: 599 Z-score: 738.4 bits: 141.9 E(32554): 8.3e-35
Smith-Waterman score: 599; 79.8% identity (93.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KB6 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
::: :::::::::::.::::::.:::::: :::.:::::..::: ::::.::..: :.:
CCDS34 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
: :..:::: :::::::::::::::::..::::::::::::::::::.:::.:
CCDS34 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
70 80 90 100 110
>>CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4 (107 aa)
initn: 296 init1: 249 opt: 287 Z-score: 359.7 bits: 71.7 E(32554): 1e-13
Smith-Waterman score: 287; 43.1% identity (75.2% similar) in 109 aa overlap (6-114:2-107)
10 20 30 40 50 60
pF1KB6 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
.::: .::. .:::::: . .:: ..: ::::: ::.. ..:
CCDS47 MARAALSAAPSNPRLLRVALLLLLLVAAGRRAAG--ASVATELRCQCLQTLQGIHP
10 20 30 40 50
70 80 90 100 110
pF1KB6 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
:.: ...: ::.:...::.:.::::...::.: .:..::.:.:.:.: .:.:
CCDS47 KNIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNS-DKSN
60 70 80 90 100
>>CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4 (107 aa)
initn: 288 init1: 245 opt: 269 Z-score: 337.9 bits: 67.7 E(32554): 1.7e-12
Smith-Waterman score: 269; 42.9% identity (76.5% similar) in 98 aa overlap (14-111:10-105)
10 20 30 40 50 60
pF1KB6 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
::. .:::::: . .:: ..:.::::: ::.. ..
CCDS34 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAG--ASVVTELRCQCLQTLQGIHL
10 20 30 40 50
70 80 90 100 110
pF1KB6 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
:.: ...: ::.:...::.:.:::::..::.: .:...:.:.:::..:.
CCDS34 KNIQSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN
60 70 80 90 100
>>CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4 (107 aa)
initn: 287 init1: 232 opt: 263 Z-score: 330.6 bits: 66.3 E(32554): 4.3e-12
Smith-Waterman score: 263; 40.4% identity (72.5% similar) in 109 aa overlap (6-114:2-107)
10 20 30 40 50 60
pF1KB6 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
.::. .::. .:::::: . .:: . . ::::: ::.. ..
CCDS34 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAG--APLATELRCQCLQTLQGIHL
10 20 30 40 50
70 80 90 100 110
pF1KB6 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
:.: ...: ::.:...::.:.::::...::.: .:..::.:.:.: .: :.:
CCDS34 KNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNG-KSN
60 70 80 90 100
>>CCDS3563.1 PPBP gene_id:5473|Hs108|chr4 (128 aa)
initn: 297 init1: 248 opt: 251 Z-score: 314.9 bits: 63.7 E(32554): 3.2e-11
Smith-Waterman score: 256; 40.5% identity (65.3% similar) in 121 aa overlap (2-107:7-121)
10 20 30 40
pF1KB6 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASA--GPV-------------
. :: .:: : .: .:: : :::: :::. : .
CCDS35 MSLRLDTTPSCNSAR---PLHALQVLLLLSLLLTA---LASSTKGQTKRNLAKGKEESLD
10 20 30 40 50
50 60 70 80 90 100
pF1KB6 SAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLK
: . .:::: :...: ..::.: .:.:. : .:..:::.:.::.:...::::.:: .:
CCDS35 SDLYAELRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIK
60 70 80 90 100 110
110
pF1KB6 KVIQKILDSGNKKN
:..:: :
CCDS35 KIVQKKLAGDESAD
120
>>CCDS3562.1 PF4 gene_id:5196|Hs108|chr4 (101 aa)
initn: 227 init1: 166 opt: 245 Z-score: 309.1 bits: 62.3 E(32554): 6.8e-11
Smith-Waterman score: 245; 40.4% identity (72.7% similar) in 99 aa overlap (15-109:4-101)
10 20 30 40 50
pF1KB6 MSLPSSRAARVPGPSGSLCA----LLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTL
....:: :: : ::: : .: :. . .:.: :...:
CCDS35 MSSAAGFCASRPGLLFLGLLLLPL-VVAFASAEAEEDGDLQCLCVKTTS
10 20 30 40
60 70 80 90 100 110
pF1KB6 RVNPKTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
.: :. : .:.:. :::.: ....:.::::...::: .::. ::.:.:.:.:
CCDS35 QVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES
50 60 70 80 90 100
114 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:52:57 2016 done: Fri Nov 4 23:52:57 2016
Total Scan time: 1.450 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]