FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6754, 146 aa
  1>>>pF1KB6754 146 - 146 aa - 146 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3955+/-0.000695; mu= 10.4194+/- 0.042
 mean_var=56.6167+/-11.320, 0's: 0 Z-trim(108.7): 7  B-trim: 0 in 0/52
 Lambda= 0.170452
 statistics sampled from 10410 (10415) to 10410 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.32), width:  16
 Scan time:  1.630

The best scores are:                                      opt bits E(32554)
CCDS577.1 MAGOH gene_id:4116|Hs108|chr1            ( 146)  981 248.9 8.1e-67
CCDS8628.1 MAGOHB gene_id:55110|Hs108|chr12        ( 148)  968 245.7 7.5e-66
CCDS76532.1 MAGOHB gene_id:55110|Hs108|chr12       ( 102)  671 172.6 5.2e-44


>>CCDS577.1 MAGOH gene_id:4116|Hs108|chr1                 (146 aa)
 initn: 981 init1: 981 opt: 981  Z-score: 1313.1  bits: 248.9 E(32554): 8.1e-67
Smith-Waterman score: 981; 100.0% identity (100.0% similar) in 146 aa overlap (1-146:1-146)

               10        20        30        40        50        60
pF1KB6 MESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 KRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLR
               70        80        90       100       110       120

              130       140      
pF1KB6 VFYYLVQDLKCLVFSLIGLHFKIKPI
       ::::::::::::::::::::::::::
CCDS57 VFYYLVQDLKCLVFSLIGLHFKIKPI
              130       140      

>>CCDS8628.1 MAGOHB gene_id:55110|Hs108|chr12             (148 aa)
 initn: 968 init1: 968 opt: 968  Z-score: 1295.7  bits: 245.7 E(32554): 7.5e-66
Smith-Waterman score: 968; 100.0% identity (100.0% similar) in 144 aa overlap (3-146:5-148)

                 10        20        30        40        50        
pF1KB6   MESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVME
           ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 MAVASDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVME
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB6 ELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 ELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEG
               70        80        90       100       110       120

      120       130       140      
pF1KB6 LRVFYYLVQDLKCLVFSLIGLHFKIKPI
       ::::::::::::::::::::::::::::
CCDS86 LRVFYYLVQDLKCLVFSLIGLHFKIKPI
              130       140        

>>CCDS76532.1 MAGOHB gene_id:55110|Hs108|chr12            (102 aa)
 initn: 671 init1: 671 opt: 671  Z-score: 903.6  bits: 172.6 E(32554): 5.2e-44
Smith-Waterman score: 671; 100.0% identity (100.0% similar) in 102 aa overlap (45-146:1-102)

           20        30        40        50        60        70    
pF1KB6 GKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDD
                                     ::::::::::::::::::::::::::::::
CCDS76                               MIRKEAYVHKSVMEELKRIIDDSEITKEDD
                                             10        20        30

           80        90       100       110       120       130    
pF1KB6 ALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVF
               40        50        60        70        80        90

          140      
pF1KB6 SLIGLHFKIKPI
       ::::::::::::
CCDS76 SLIGLHFKIKPI
              100  




146 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:55:31 2016 done: Sat Nov  5 07:55:31 2016
 Total Scan time:  1.630 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]