FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6751, 104 aa
  1>>>pF1KB6751 104 - 104 aa - 104 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7182+/-0.00032; mu= 11.6976+/- 0.020
 mean_var=47.9253+/- 9.646, 0's: 0 Z-trim(114.9): 8  B-trim: 1338 in 2/50
 Lambda= 0.185264
 statistics sampled from 24962 (24970) to 24962 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.293), width:  16
 Scan time:  3.350

The best scores are:                                      opt bits E(85289)
NP_000272 (OMIM: 126090,264070) pterin-4-alpha-car ( 104)  699 193.9 4.1e-50
NP_001309933 (OMIM: 126090,264070) pterin-4-alpha- ( 104)  506 142.3 1.4e-34
NP_115527 (OMIM: 609836) pterin-4-alpha-carbinolam ( 130)  468 132.1 1.9e-31
NP_001276726 (OMIM: 126090,264070) pterin-4-alpha- (  55)  361 103.4 3.7e-23


>>NP_000272 (OMIM: 126090,264070) pterin-4-alpha-carbino  (104 aa)
 initn: 699 init1: 699 opt: 699  Z-score: 1020.7  bits: 193.9 E(85289): 4.1e-50
Smith-Waterman score: 699; 100.0% identity (100.0% similar) in 104 aa overlap (1-104:1-104)

               10        20        30        40        50        60
pF1KB6 MAGKAHRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAGKAHRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKL
               10        20        30        40        50        60

               70        80        90       100    
pF1KB6 DHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT
       ::::::::::::::::::::::::::::::::::::::::::::
NP_000 DHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT
               70        80        90       100    

>>NP_001309933 (OMIM: 126090,264070) pterin-4-alpha-carb  (104 aa)
 initn: 506 init1: 506 opt: 506  Z-score: 741.9  bits: 142.3 E(85289): 1.4e-34
Smith-Waterman score: 506; 100.0% identity (100.0% similar) in 73 aa overlap (1-73:1-73)

               10        20        30        40        50        60
pF1KB6 MAGKAHRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGKAHRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKL
               10        20        30        40        50        60

               70        80        90       100    
pF1KB6 DHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT
       :::::::::::::                               
NP_001 DHHPEWFNVYNKVSRLQASGVQQYHLLSWFSSLPTTDLGTCQPP
               70        80        90       100    

>>NP_115527 (OMIM: 609836) pterin-4-alpha-carbinolamine   (130 aa)
 initn: 479 init1: 462 opt: 468  Z-score: 685.5  bits: 132.1 E(85289): 1.9e-31
Smith-Waterman score: 468; 61.2% identity (93.2% similar) in 103 aa overlap (1-103:28-130)

                                          10        20        30   
pF1KB6                            MAGKAHRLSAEERDQLLPNLRAVGWNELEGRDA
                                  :.. .:::.::::.: . .:.:.::.::  :::
NP_115 MAAVLGALGATRRLLAALRGQSLGLAAMSSGTHRLTAEERNQAILDLKAAGWSELSERDA
               10        20        30        40        50        60

            40        50        60        70        80        90   
pF1KB6 IFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLA
       :.:.: :..::.:::::.::::::::..::::::::::::.:::..:.:. :...:..::
NP_115 IYKEFSFHNFNQAFGFMSRVALQAEKMNHHPEWFNVYNKVQITLTSHDCGELTKKDVKLA
               70        80        90       100       110       120

           100    
pF1KB6 SFIEQVAVSMT
       .:::..:.:. 
NP_115 KFIEKAAASV 
              130 

>>NP_001276726 (OMIM: 126090,264070) pterin-4-alpha-carb  (55 aa)
 initn: 361 init1: 361 opt: 361  Z-score: 536.8  bits: 103.4 E(85289): 3.7e-23
Smith-Waterman score: 361; 100.0% identity (100.0% similar) in 55 aa overlap (50-104:1-55)

      20        30        40        50        60        70         
pF1KB6 LRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLST
                                     ::::::::::::::::::::::::::::::
NP_001                               MTRVALQAEKLDHHPEWFNVYNKVHITLST
                                             10        20        30

      80        90       100    
pF1KB6 HECAGLSERDINLASFIEQVAVSMT
       :::::::::::::::::::::::::
NP_001 HECAGLSERDINLASFIEQVAVSMT
               40        50     




104 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:47:34 2016 done: Fri Nov  4 23:47:34 2016
 Total Scan time:  3.350 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]