FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6751, 104 aa
  1>>>pF1KB6751 104 - 104 aa - 104 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8876+/-0.000654; mu= 10.6640+/- 0.039
 mean_var=45.8727+/- 9.177, 0's: 0 Z-trim(108.1): 9  B-trim: 0 in 0/51
 Lambda= 0.189364
 statistics sampled from 9959 (9964) to 9959 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.306), width:  16
 Scan time:  1.310

The best scores are:                                      opt bits E(32554)
CCDS31217.1 PCBD1 gene_id:5092|Hs108|chr10         ( 104)  699 197.8   1e-51
CCDS43364.1 PCBD2 gene_id:84105|Hs108|chr5         ( 130)  468 134.7 1.2e-32


>>CCDS31217.1 PCBD1 gene_id:5092|Hs108|chr10              (104 aa)
 initn: 699 init1: 699 opt: 699  Z-score: 1042.0  bits: 197.8 E(32554): 1e-51
Smith-Waterman score: 699; 100.0% identity (100.0% similar) in 104 aa overlap (1-104:1-104)

               10        20        30        40        50        60
pF1KB6 MAGKAHRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAGKAHRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKL
               10        20        30        40        50        60

               70        80        90       100    
pF1KB6 DHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DHHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQVAVSMT
               70        80        90       100    

>>CCDS43364.1 PCBD2 gene_id:84105|Hs108|chr5              (130 aa)
 initn: 479 init1: 462 opt: 468  Z-score: 699.3  bits: 134.7 E(32554): 1.2e-32
Smith-Waterman score: 468; 61.2% identity (93.2% similar) in 103 aa overlap (1-103:28-130)

                                          10        20        30   
pF1KB6                            MAGKAHRLSAEERDQLLPNLRAVGWNELEGRDA
                                  :.. .:::.::::.: . .:.:.::.::  :::
CCDS43 MAAVLGALGATRRLLAALRGQSLGLAAMSSGTHRLTAEERNQAILDLKAAGWSELSERDA
               10        20        30        40        50        60

            40        50        60        70        80        90   
pF1KB6 IFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAGLSERDINLA
       :.:.: :..::.:::::.::::::::..::::::::::::.:::..:.:. :...:..::
CCDS43 IYKEFSFHNFNQAFGFMSRVALQAEKMNHHPEWFNVYNKVQITLTSHDCGELTKKDVKLA
               70        80        90       100       110       120

           100    
pF1KB6 SFIEQVAVSMT
       .:::..:.:. 
CCDS43 KFIEKAAASV 
              130 




104 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:47:33 2016 done: Fri Nov  4 23:47:33 2016
 Total Scan time:  1.310 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]