Result of FASTA (omim) for
pF1KB6750
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6750, 145 aa
1>>>pF1KB6750 145 - 145 aa - 145 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0202+/-0.000317; mu= 13.1868+/- 0.020
mean_var=60.2110+/-12.297, 0's: 0 Z-trim(115.3): 9 B-trim: 0 in 0/50
Lambda= 0.165286
statistics sampled from 25591 (25598) to 25591 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.3), width: 16
Scan time: 4.690
The best scores are: opt bits E(85289)
NP_001308413 (OMIM: 105650,603474) 40S ribosomal p ( 145) 957 236.0 1.6e-62
NP_001308412 (OMIM: 105650,603474) 40S ribosomal p ( 145) 957 236.0 1.6e-62
NP_001013 (OMIM: 105650,603474) 40S ribosomal prot ( 145) 957 236.0 1.6e-62
XP_016882602 (OMIM: 105650,603474) PREDICTED: 40S ( 193) 915 226.1 2.1e-59
NP_001308414 (OMIM: 105650,603474) 40S ribosomal p ( 156) 381 98.7 3.8e-21
>>NP_001308413 (OMIM: 105650,603474) 40S ribosomal prote (145 aa)
initn: 957 init1: 957 opt: 957 Z-score: 1243.5 bits: 236.0 E(85289): 1.6e-62
Smith-Waterman score: 957; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB6 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
70 80 90 100 110 120
130 140
pF1KB6 RKLTPQGQRDLDRIAGQVAAANKKH
:::::::::::::::::::::::::
NP_001 RKLTPQGQRDLDRIAGQVAAANKKH
130 140
>>NP_001308412 (OMIM: 105650,603474) 40S ribosomal prote (145 aa)
initn: 957 init1: 957 opt: 957 Z-score: 1243.5 bits: 236.0 E(85289): 1.6e-62
Smith-Waterman score: 957; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB6 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
70 80 90 100 110 120
130 140
pF1KB6 RKLTPQGQRDLDRIAGQVAAANKKH
:::::::::::::::::::::::::
NP_001 RKLTPQGQRDLDRIAGQVAAANKKH
130 140
>>NP_001013 (OMIM: 105650,603474) 40S ribosomal protein (145 aa)
initn: 957 init1: 957 opt: 957 Z-score: 1243.5 bits: 236.0 E(85289): 1.6e-62
Smith-Waterman score: 957; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB6 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
70 80 90 100 110 120
130 140
pF1KB6 RKLTPQGQRDLDRIAGQVAAANKKH
:::::::::::::::::::::::::
NP_001 RKLTPQGQRDLDRIAGQVAAANKKH
130 140
>>XP_016882602 (OMIM: 105650,603474) PREDICTED: 40S ribo (193 aa)
initn: 915 init1: 915 opt: 915 Z-score: 1187.5 bits: 226.1 E(85289): 2.1e-59
Smith-Waterman score: 915; 98.6% identity (98.6% similar) in 141 aa overlap (1-141:1-141)
10 20 30 40 50 60
pF1KB6 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
70 80 90 100 110 120
130 140
pF1KB6 RKLTPQGQRDLDRIAGQVAAANKKH
:::::::::::::::::: :
XP_016 RKLTPQGQRDLDRIAGQVRPAFGVGLGPLVAAQAFPKPILCQVDLFPSLEGTAQGAGGVR
130 140 150 160 170 180
>>NP_001308414 (OMIM: 105650,603474) 40S ribosomal prote (156 aa)
initn: 381 init1: 381 opt: 381 Z-score: 500.7 bits: 98.7 E(85289): 3.8e-21
Smith-Waterman score: 381; 100.0% identity (100.0% similar) in 57 aa overlap (1-57:1-57)
10 20 30 40 50 60
pF1KB6 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAGEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
NP_001 LSFHSAAPVPPGWRWGWLHDQDLWGTSEKRRHAQPLQPRLQECGPPGPPSPGGAENGGKG
70 80 90 100 110 120
145 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:54:27 2016 done: Sat Nov 5 13:54:28 2016
Total Scan time: 4.690 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]