FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6750, 145 aa
  1>>>pF1KB6750 145 - 145 aa - 145 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2615+/-0.000682; mu= 11.7201+/- 0.041
 mean_var=57.4280+/-11.428, 0's: 0 Z-trim(108.5): 8  B-trim: 0 in 0/50
 Lambda= 0.169244
 statistics sampled from 10257 (10259) to 10257 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.315), width:  16
 Scan time:  1.600

The best scores are:                                      opt bits E(32554)
CCDS12588.1 RPS19 gene_id:6223|Hs108|chr19         ( 145)  957 241.3 1.6e-64


>>CCDS12588.1 RPS19 gene_id:6223|Hs108|chr19              (145 aa)
 initn: 957 init1: 957 opt: 957  Z-score: 1271.8  bits: 241.3 E(32554): 1.6e-64
Smith-Waterman score: 957; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KB6 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
               70        80        90       100       110       120

              130       140     
pF1KB6 RKLTPQGQRDLDRIAGQVAAANKKH
       :::::::::::::::::::::::::
CCDS12 RKLTPQGQRDLDRIAGQVAAANKKH
              130       140     




145 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:54:26 2016 done: Sat Nov  5 13:54:27 2016
 Total Scan time:  1.600 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]