FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6746, 144 aa
  1>>>pF1KB6746 144 - 144 aa - 144 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9400+/-0.000687; mu= 13.4052+/- 0.041
 mean_var=57.2837+/-11.343, 0's: 0 Z-trim(108.0): 15  B-trim: 0 in 0/50
 Lambda= 0.169457
 statistics sampled from 9932 (9941) to 9932 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.305), width:  16
 Scan time:  1.690

The best scores are:                                      opt bits E(32554)
CCDS4108.1 SRP19 gene_id:6728|Hs108|chr5           ( 144)  951 240.1 3.6e-64
CCDS56375.1 SRP19 gene_id:6728|Hs108|chr5          ( 110)  677 173.1 4.2e-44
CCDS75286.1 SRP19 gene_id:6728|Hs108|chr5          ( 120)  537 138.8   9e-34


>>CCDS4108.1 SRP19 gene_id:6728|Hs108|chr5                (144 aa)
 initn: 951 init1: 951 opt: 951  Z-score: 1265.6  bits: 240.1 E(32554): 3.6e-64
Smith-Waterman score: 951; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KB6 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ
               70        80        90       100       110       120

              130       140    
pF1KB6 KTGGADQSLQQGEGSKKGKGKKKK
       ::::::::::::::::::::::::
CCDS41 KTGGADQSLQQGEGSKKGKGKKKK
              130       140    

>>CCDS56375.1 SRP19 gene_id:6728|Hs108|chr5               (110 aa)
 initn: 677 init1: 677 opt: 677  Z-score: 905.3  bits: 173.1 E(32554): 4.2e-44
Smith-Waterman score: 677; 95.3% identity (98.1% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KB6 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ
       ::::::::::::::::::::::::::::::::::::::::. .. :              
CCDS56 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSHYTLSLTSGS          
               70        80        90       100       110          

              130       140    
pF1KB6 KTGGADQSLQQGEGSKKGKGKKKK

>>CCDS75286.1 SRP19 gene_id:6728|Hs108|chr5               (120 aa)
 initn: 537 init1: 537 opt: 537  Z-score: 719.8  bits: 138.8 E(32554): 9e-34
Smith-Waterman score: 742; 83.3% identity (83.3% similar) in 144 aa overlap (1-144:1-120)

               10        20        30        40        50        60
pF1KB6 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV
       :::::::::::::::::::::::::::::::::::::::                     
CCDS75 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISK---------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KB6 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ---KNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ
         40        50        60        70        80        90      

              130       140    
pF1KB6 KTGGADQSLQQGEGSKKGKGKKKK
       ::::::::::::::::::::::::
CCDS75 KTGGADQSLQQGEGSKKGKGKKKK
        100       110       120




144 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:08:23 2016 done: Sat Nov  5 20:08:23 2016
 Total Scan time:  1.690 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]