Result of FASTA (omim) for
pF1KB6741
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6741, 98 aa
1>>>pF1KB6741 98 - 98 aa - 98 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8262+/-0.0003; mu= 11.3340+/- 0.019
mean_var=53.7689+/-10.722, 0's: 0 Z-trim(118.0): 70 B-trim: 508 in 1/49
Lambda= 0.174908
statistics sampled from 30536 (30606) to 30536 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.359), width: 16
Scan time: 4.140
The best scores are: opt bits E(85289)
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 652 171.6 1.8e-43
NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 449 120.4 4.7e-28
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 431 115.9 1.1e-26
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 422 113.6 5.3e-26
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 406 109.5 8.6e-25
NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 272 75.7 1.2e-14
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 272 75.7 1.2e-14
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 270 75.2 1.8e-14
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 265 74.0 4.2e-14
NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 240 67.6 3.3e-12
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 236 66.6 6.8e-12
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 233 65.9 1.1e-11
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 222 63.2 9.7e-11
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 222 63.2 9.7e-11
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 222 63.2 9.7e-11
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 218 62.1 1.8e-10
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 216 61.6 2.3e-10
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 216 61.6 2.3e-10
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 215 61.3 2.6e-10
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 216 61.7 3.3e-10
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre ( 96) 193 55.8 1.3e-08
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120) 190 55.1 2.6e-08
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120) 190 55.1 2.6e-08
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 188 54.5 2.9e-08
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr ( 94) 173 50.7 4.2e-07
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122) 173 50.8 5.2e-07
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123) 173 50.8 5.2e-07
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr ( 93) 171 50.2 5.9e-07
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c ( 93) 171 50.2 5.9e-07
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113) 168 49.5 1.2e-06
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 167 49.3 1.6e-06
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 166 49.0 1.7e-06
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 166 49.0 1.7e-06
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 166 49.0 1.7e-06
NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103) 164 48.5 2.2e-06
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 165 48.8 2.3e-06
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 165 48.8 2.4e-06
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 163 48.3 2.9e-06
NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397) 165 49.0 5.7e-06
NP_001278401 (OMIM: 610757) C-C motif chemokine 4- ( 96) 155 46.2 9.9e-06
NP_001278398 (OMIM: 610757) C-C motif chemokine 4- ( 64) 153 45.6 1e-05
NP_001278399 (OMIM: 610757) C-C motif chemokine 4- ( 64) 153 45.6 1e-05
NP_001278402 (OMIM: 610757) C-C motif chemokine 4- ( 86) 153 45.7 1.3e-05
NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103) 153 45.7 1.5e-05
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 144 43.4 6.9e-05
NP_001265665 (OMIM: 187011) C-C motif chemokine 5 ( 154) 145 43.8 8.5e-05
NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 142 42.9 9.9e-05
NP_000600 (OMIM: 600835,609423) stromal cell-deriv ( 93) 133 40.6 0.00045
NP_954637 (OMIM: 600835,609423) stromal cell-deriv ( 89) 131 40.1 0.00062
NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119) 131 40.2 0.00079
>>NP_005399 (OMIM: 601391) C-C motif chemokine 13 precur (98 aa)
initn: 652 init1: 652 opt: 652 Z-score: 901.5 bits: 171.6 E(85289): 1.8e-43
Smith-Waterman score: 652; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)
10 20 30 40 50 60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
10 20 30 40 50 60
70 80 90
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
::::::::::::::::::::::::::::::::::::::
NP_005 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
70 80 90
>>NP_002973 (OMIM: 158105,182940,607948,609423) C-C moti (99 aa)
initn: 267 init1: 259 opt: 449 Z-score: 624.6 bits: 120.4 E(85289): 4.7e-28
Smith-Waterman score: 449; 64.6% identity (89.9% similar) in 99 aa overlap (1-98:1-99)
10 20 30 40 50
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYV-ITTSRCP
:::::.::::::..:.: :::::::::.:.: :::..:...:::.::: :: ::.:.::
NP_002 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCP
10 20 30 40 50 60
60 70 80 90
pF1KB6 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
..::::.: ..::::::::.::::. : :: ....: ::
NP_002 KEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
70 80 90
>>NP_005614 (OMIM: 602283) C-C motif chemokine 8 precurs (99 aa)
initn: 429 init1: 245 opt: 431 Z-score: 600.1 bits: 115.9 E(85289): 1.1e-26
Smith-Waterman score: 431; 62.2% identity (88.8% similar) in 98 aa overlap (1-97:1-98)
10 20 30 40 50
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYV-ITTSRCP
:::::.:::::::.:.:.::::::::....: ::::. ..:: .:::.::. ::. .::
NP_005 MKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLESYTRITNIQCP
10 20 30 40 50 60
60 70 80 90
pF1KB6 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
..::::.:: :::.::::::.::.. :::: . ..::
NP_005 KEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
70 80 90
>>NP_006264 (OMIM: 158106) C-C motif chemokine 7 precurs (99 aa)
initn: 420 init1: 231 opt: 422 Z-score: 587.8 bits: 113.6 E(85289): 5.3e-26
Smith-Waterman score: 422; 64.3% identity (85.7% similar) in 98 aa overlap (1-97:1-98)
10 20 30 40 50
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTS-RCP
::.::.:::::: .:::.::::::: ..:. .:::. : .::: :::.:: ::: .::
NP_006 MKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLESYRRTTSSHCP
10 20 30 40 50 60
60 70 80 90
pF1KB6 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
..::::.::: ::::::: .::::..:::: .:..: :
NP_006 REAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
70 80 90
>>NP_002977 (OMIM: 600807,601156,609423) eotaxin precurs (97 aa)
initn: 411 init1: 214 opt: 406 Z-score: 566.1 bits: 109.5 E(85289): 8.6e-25
Smith-Waterman score: 406; 64.3% identity (87.8% similar) in 98 aa overlap (1-97:1-96)
10 20 30 40 50
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYV-ITTSRCP
:::::.:: :::..:::.::::: : . ::.::::.....:: ::::.:: ::...::
NP_002 MKVSAALLWLLLIAAAFSPQGLAGPAS--VPTTCCFNLANRKIPLQRLESYRRITSGKCP
10 20 30 40 50
60 70 80 90
pF1KB6 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
::::::.:::.:.::::::.::::. ::.: .:. : :
NP_002 QKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
60 70 80 90
>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3- (93 aa)
initn: 285 init1: 263 opt: 272 Z-score: 383.6 bits: 75.7 E(85289): 1.2e-14
Smith-Waterman score: 272; 42.7% identity (76.4% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
:.::.. : .:: : :. : :. : : ..:..:::...:..: . . .: :.:.: .
NP_066 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50 60
70 80 90
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
.::: :: :...::::.:.:::.:.. :
NP_066 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
70 80 90
>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like (93 aa)
initn: 285 init1: 263 opt: 272 Z-score: 383.6 bits: 75.7 E(85289): 1.2e-14
Smith-Waterman score: 272; 42.7% identity (76.4% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
:.::.. : .:: : :. : :. : : ..:..:::...:..: . . .: :.:.: .
NP_001 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50 60
70 80 90
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
.::: :: :...::::.:.:::.:.. :
NP_001 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
70 80 90
>>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr (92 aa)
initn: 287 init1: 270 opt: 270 Z-score: 381.0 bits: 75.2 E(85289): 1.8e-14
Smith-Waterman score: 270; 41.6% identity (76.4% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
::. ...: ::...::: .:. : . . :..:::.....:. . . .: :.: : :
NP_996 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
::.:.:: ::..::::.:.:::.:. :
NP_996 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN
70 80 90
>>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs (92 aa)
initn: 289 init1: 265 opt: 265 Z-score: 374.2 bits: 74.0 E(85289): 4.2e-14
Smith-Waterman score: 265; 40.4% identity (76.4% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
::. ...: ::...::: .:. : . . :..:::.....:. . . .: :.: : :
NP_002 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
::.:.:: .:..::::.:.:::.:. :
NP_002 PAVVFQTKRSKQVCADPSESWVQEYVYDLELN
70 80 90
>>NP_002974 (OMIM: 182283,609423) C-C motif chemokine 3 (92 aa)
initn: 244 init1: 196 opt: 240 Z-score: 340.1 bits: 67.6 E(85289): 3.3e-12
Smith-Waterman score: 240; 39.3% identity (75.3% similar) in 89 aa overlap (1-89:1-88)
10 20 30 40 50 60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
:.::.. : .:: : :. : .. : ..:..:::...:..: . . .: :.:.: .
NP_002 MQVSTAALAVLLCTMALCNQ-FSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50
70 80 90
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
.::: :: ....::::.:.:::.:.. :
NP_002 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
98 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:43:40 2016 done: Fri Nov 4 23:43:41 2016
Total Scan time: 4.140 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]