Result of FASTA (ccds) for
pF1KB6741
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6741, 98 aa
1>>>pF1KB6741 98 - 98 aa - 98 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7449+/-0.000569; mu= 11.7055+/- 0.034
mean_var=53.2502+/-10.424, 0's: 0 Z-trim(111.7): 49 B-trim: 0 in 0/51
Lambda= 0.175757
statistics sampled from 12563 (12612) to 12563 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.387), width: 16
Scan time: 1.540
The best scores are: opt bits E(32554)
CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17 ( 98) 652 172.3 4.3e-44
CCDS11277.1 CCL2 gene_id:6347|Hs108|chr17 ( 99) 449 120.8 1.4e-28
CCDS11280.1 CCL8 gene_id:6355|Hs108|chr17 ( 99) 431 116.2 3.2e-27
CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17 ( 99) 422 114.0 1.6e-26
CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17 ( 97) 406 109.9 2.6e-25
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 ( 93) 272 75.9 4.2e-15
CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 ( 92) 265 74.1 1.4e-14
CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 ( 92) 240 67.8 1.2e-12
CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 ( 93) 236 66.8 2.4e-12
CCDS32627.2 CCL4L2 gene_id:9560|Hs108|chr17 ( 87) 233 66.0 3.8e-12
CCDS34670.1 CCL24 gene_id:6369|Hs108|chr7 ( 119) 222 63.3 3.4e-11
CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17 ( 109) 218 62.2 6.3e-11
CCDS5578.1 CCL26 gene_id:10344|Hs108|chr7 ( 94) 216 61.7 8e-11
CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17 ( 91) 215 61.4 9.3e-11
>>CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17 (98 aa)
initn: 652 init1: 652 opt: 652 Z-score: 905.0 bits: 172.3 E(32554): 4.3e-44
Smith-Waterman score: 652; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)
10 20 30 40 50 60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
10 20 30 40 50 60
70 80 90
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
::::::::::::::::::::::::::::::::::::::
CCDS11 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
70 80 90
>>CCDS11277.1 CCL2 gene_id:6347|Hs108|chr17 (99 aa)
initn: 267 init1: 259 opt: 449 Z-score: 626.8 bits: 120.8 E(32554): 1.4e-28
Smith-Waterman score: 449; 64.6% identity (89.9% similar) in 99 aa overlap (1-98:1-99)
10 20 30 40 50
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYV-ITTSRCP
:::::.::::::..:.: :::::::::.:.: :::..:...:::.::: :: ::.:.::
CCDS11 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCP
10 20 30 40 50 60
60 70 80 90
pF1KB6 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
..::::.: ..::::::::.::::. : :: ....: ::
CCDS11 KEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
70 80 90
>>CCDS11280.1 CCL8 gene_id:6355|Hs108|chr17 (99 aa)
initn: 429 init1: 245 opt: 431 Z-score: 602.1 bits: 116.2 E(32554): 3.2e-27
Smith-Waterman score: 431; 62.2% identity (88.8% similar) in 98 aa overlap (1-97:1-98)
10 20 30 40 50
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYV-ITTSRCP
:::::.:::::::.:.:.::::::::....: ::::. ..:: .:::.::. ::. .::
CCDS11 MKVSAALLCLLLMAATFSPQGLAQPDSVSIPITCCFNVINRKIPIQRLESYTRITNIQCP
10 20 30 40 50 60
60 70 80 90
pF1KB6 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
..::::.:: :::.::::::.::.. :::: . ..::
CCDS11 KEAVIFKTKRGKEVCADPKERWVRDSMKHLDQIFQNLKP
70 80 90
>>CCDS11278.1 CCL7 gene_id:6354|Hs108|chr17 (99 aa)
initn: 420 init1: 231 opt: 422 Z-score: 589.8 bits: 114.0 E(32554): 1.6e-26
Smith-Waterman score: 422; 64.3% identity (85.7% similar) in 98 aa overlap (1-97:1-98)
10 20 30 40 50
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTS-RCP
::.::.:::::: .:::.::::::: ..:. .:::. : .::: :::.:: ::: .::
CCDS11 MKASAALLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLESYRRTTSSHCP
10 20 30 40 50 60
60 70 80 90
pF1KB6 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
..::::.::: ::::::: .::::..:::: .:..: :
CCDS11 REAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL
70 80 90
>>CCDS11279.1 CCL11 gene_id:6356|Hs108|chr17 (97 aa)
initn: 411 init1: 214 opt: 406 Z-score: 568.0 bits: 109.9 E(32554): 2.6e-25
Smith-Waterman score: 406; 64.3% identity (87.8% similar) in 98 aa overlap (1-97:1-96)
10 20 30 40 50
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYV-ITTSRCP
:::::.:: :::..:::.::::: : . ::.::::.....:: ::::.:: ::...::
CCDS11 MKVSAALLWLLLIAAAFSPQGLAGPAS--VPTTCCFNLANRKIPLQRLESYRRITSGKCP
10 20 30 40 50
60 70 80 90
pF1KB6 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
::::::.:::.:.::::::.::::. ::.: .:. : :
CCDS11 QKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP
60 70 80 90
>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 (93 aa)
initn: 285 init1: 263 opt: 272 Z-score: 384.6 bits: 75.9 E(32554): 4.2e-15
Smith-Waterman score: 272; 42.7% identity (76.4% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
:.::.. : .:: : :. : :. : : ..:..:::...:..: . . .: :.:.: .
CCDS32 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50 60
70 80 90
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
.::: :: :...::::.:.:::.:.. :
CCDS32 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
70 80 90
>>CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 (92 aa)
initn: 289 init1: 265 opt: 265 Z-score: 375.1 bits: 74.1 E(32554): 1.4e-14
Smith-Waterman score: 265; 40.4% identity (76.4% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
::. ...: ::...::: .:. : . . :..:::.....:. . . .: :.: : :
CCDS11 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
::.:.:: .:..::::.:.:::.:. :
CCDS11 PAVVFQTKRSKQVCADPSESWVQEYVYDLELN
70 80 90
>>CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 (92 aa)
initn: 244 init1: 196 opt: 240 Z-score: 340.8 bits: 67.8 E(32554): 1.2e-12
Smith-Waterman score: 240; 39.3% identity (75.3% similar) in 89 aa overlap (1-89:1-88)
10 20 30 40 50 60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
:.::.. : .:: : :. : .. : ..:..:::...:..: . . .: :.:.: .
CCDS11 MQVSTAALAVLLCTMALCNQ-FSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50
70 80 90
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
.::: :: ....::::.:.:::.:.. :
CCDS11 PGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 (93 aa)
initn: 238 init1: 224 opt: 236 Z-score: 335.3 bits: 66.8 E(32554): 2.4e-12
Smith-Waterman score: 236; 37.8% identity (72.2% similar) in 90 aa overlap (1-89:1-90)
10 20 30 40 50
pF1KB6 MKVS-AVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCP
::.: :.. .::.: :.. . .. . :: ::::... :: ::. .: :.:.:
CCDS32 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
10 20 30 40 50 60
60 70 80 90
pF1KB6 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
. ...: :: :. .:..:..::::.:.: .
CCDS32 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
70 80 90
>>CCDS32627.2 CCL4L2 gene_id:9560|Hs108|chr17 (87 aa)
initn: 249 init1: 153 opt: 233 Z-score: 331.6 bits: 66.0 E(32554): 3.8e-12
Smith-Waterman score: 233; 38.2% identity (71.9% similar) in 89 aa overlap (1-89:1-84)
10 20 30 40 50 60
pF1KB6 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCPQ
::. ...: ::...::: .:. : . . :..:::.....:. . . .: :.: : :
CCDS32 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KB6 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
::. ::..::::.:.:::.:. :
CCDS32 PAVV-----GKQVCADPSESWVQEYVYDLELN
70 80
98 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:43:40 2016 done: Fri Nov 4 23:43:40 2016
Total Scan time: 1.540 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]