FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6739, 98 aa
  1>>>pF1KB6739 98 - 98 aa - 98 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6931+/-0.000568; mu= 12.5811+/- 0.034
 mean_var=56.3488+/-10.971, 0's: 0 Z-trim(112.1): 29  B-trim: 44 in 1/50
 Lambda= 0.170857
 statistics sampled from 12890 (12919) to 12890 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.397), width:  16
 Scan time:  1.440

The best scores are:                                      opt bits E(32554)
CCDS43240.1 CXCL10 gene_id:3627|Hs108|chr4         (  98)  640 164.7   8e-42
CCDS34014.1 CXCL9 gene_id:4283|Hs108|chr4          ( 125)  234 64.7 1.3e-11


>>CCDS43240.1 CXCL10 gene_id:3627|Hs108|chr4              (98 aa)
 initn: 640 init1: 640 opt: 640  Z-score: 864.4  bits: 164.7 E(32554): 8e-42
Smith-Waterman score: 640; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KB6 MNQTAILICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MNQTAILICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPRV
               10        20        30        40        50        60

               70        80        90        
pF1KB6 EIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP
       ::::::::::::::::::::::::::::::::::::::
CCDS43 EIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP
               70        80        90        

>>CCDS34014.1 CXCL9 gene_id:4283|Hs108|chr4               (125 aa)
 initn: 234 init1: 136 opt: 234  Z-score: 322.0  bits: 64.7 E(32554): 1.3e-11
Smith-Waterman score: 234; 38.1% identity (72.2% similar) in 97 aa overlap (1-96:1-96)

                10        20        30        40        50         
pF1KB6 MNQTAIL-ICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPR
       :.....: .  .:.:.: :.::.:. :  ::.::: ..  .. .::. :. .  :  : .
CCDS34 MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK
               10        20        30        40        50        60

      60        70        80        90                             
pF1KB6 VEIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP                     
       .:::::.:. : . ::::.:  .:.:.:   :. :..                       
CCDS34 IEIIATLKN-GVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRS
                70        80        90       100       110         

CCDS34 RQKKTT
     120     




98 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:54:54 2016 done: Sat Nov  5 07:54:54 2016
 Total Scan time:  1.440 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]