FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6738, 140 aa
  1>>>pF1KB6738 140 - 140 aa - 140 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3482+/-0.000754; mu= 10.1630+/- 0.045
 mean_var=54.2103+/-11.204, 0's: 0 Z-trim(106.8): 18  B-trim: 165 in 1/48
 Lambda= 0.174194
 statistics sampled from 9194 (9202) to 9194 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.283), width:  16
 Scan time:  1.380

The best scores are:                                      opt bits E(32554)
CCDS11061.1 PFN1 gene_id:5216|Hs108|chr17          ( 140)  930 241.4 1.3e-64
CCDS46934.1 PFN2 gene_id:5217|Hs108|chr3           ( 140)  616 162.5 7.6e-41
CCDS3148.1 PFN2 gene_id:5217|Hs108|chr3            ( 140)  605 159.8 5.2e-40
CCDS34301.1 PFN3 gene_id:345456|Hs108|chr5         ( 137)  400 108.2 1.6e-24


>>CCDS11061.1 PFN1 gene_id:5216|Hs108|chr17               (140 aa)
 initn: 930 init1: 930 opt: 930  Z-score: 1273.3  bits: 241.4 E(32554): 1.3e-64
Smith-Waterman score: 930; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB6 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH
               70        80        90       100       110       120

              130       140
pF1KB6 GGLINKKCYEMASHLRRSQY
       ::::::::::::::::::::
CCDS11 GGLINKKCYEMASHLRRSQY
              130       140

>>CCDS46934.1 PFN2 gene_id:5217|Hs108|chr3                (140 aa)
 initn: 616 init1: 616 opt: 616  Z-score: 846.8  bits: 162.5 E(32554): 7.6e-41
Smith-Waterman score: 616; 63.0% identity (84.8% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KB6 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY
       ::::..:.:::: :: ::.:::::: :.  ::::. : .: .::: :. ..::::: .:.
CCDS46 MAGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREGFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH
       .::::::..:::::::::  ::. .::.:::: :: ::.::.: .. ..::..:::::::
CCDS46 TNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRALVIVMGKEGVH
               70        80        90       100       110       120

              130       140
pF1KB6 GGLINKKCYEMASHLRRSQY
       :: .::: ::.: .::::  
CCDS46 GGTLNKKAYELALYLRRSDV
              130       140

>>CCDS3148.1 PFN2 gene_id:5217|Hs108|chr3                 (140 aa)
 initn: 632 init1: 605 opt: 605  Z-score: 831.9  bits: 159.8 E(32554): 5.2e-40
Smith-Waterman score: 605; 61.4% identity (83.6% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB6 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY
       ::::..:.:::: :: ::.:::::: :.  ::::. : .: .::: :. ..::::: .:.
CCDS31 MAGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREGFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH
       .::::::..:::::::::  ::. .::.:::: :: ::.::.: .. ..::..:::::::
CCDS31 TNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEGVH
               70        80        90       100       110       120

              130       140
pF1KB6 GGLINKKCYEMASHLRRSQY
       :: .::: : ::..:: : .
CCDS31 GGGLNKKAYSMAKYLRDSGF
              130       140

>>CCDS34301.1 PFN3 gene_id:345456|Hs108|chr5              (137 aa)
 initn: 401 init1: 300 opt: 400  Z-score: 553.6  bits: 108.2 E(32554): 1.6e-24
Smith-Waterman score: 400; 44.1% identity (70.6% similar) in 136 aa overlap (1-136:1-133)

               10        20        30        40        50        60
pF1KB6 MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFY
       :. :..::. .. :   .:.::::. :.  :::. ::  .. :.: :::::.: :: .: 
CCDS34 MGDWKVYISAVLRDQRIDDVAIVGHADNSCVWASRPGGLLAAISPQEVGVLTGPDRHTFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH
         ::..::..: :::: :: .:.  .: :::   :  .  : : .. ..:..:::..:::
CCDS34 QAGLSVGGRRCCVIRDHLLAEGDGVLDARTK---GLDARAVCVGRAPRALLVLMGRRGVH
               70        80        90          100       110       

              130       140
pF1KB6 GGLINKKCYEMASHLRRSQY
       ::..::  .:.   ::    
CCDS34 GGILNKTVHELIRGLRMQGA
       120       130       




140 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:43:08 2016 done: Fri Nov  4 23:43:08 2016
 Total Scan time:  1.380 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]